Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP21_F_L02
         (903 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC22E12.19 ||SPAC2E12.01|histone deacetylase complex subunit |...    29   1.2  
SPBC317.01 |mbx2|pvg4|MADS-box transcription factor Pvg4|Schizos...    27   3.6  
SPAC4A8.16c |tif33|SPAC823.01c|translation initiation factor eIF...    26   6.4  
SPAC22F8.02c |pvg5|mug50|PvGal biosynthesis protein Pvg5|Schizos...    26   6.4  
SPBC4.03c |||COPII-coated vesicle component Sfb3 |Schizosaccharo...    26   6.4  
SPAC17H9.09c |ras1|ste5|GTPase Ras1|Schizosaccharomyces pombe|ch...    26   6.4  
SPAC25B8.04c |||mitochondrial splicing suppressor |Schizosacchar...    26   8.4  
SPAC1687.22c |puf3|SPAC222.02c|RNA-binding protein Puf3 |Schizos...    26   8.4  
SPBP22H7.05c |||ATPase with bromodomain protein|Schizosaccharomy...    26   8.4  

>SPAC22E12.19 ||SPAC2E12.01|histone deacetylase complex subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 661

 Score = 28.7 bits (61), Expect = 1.2
 Identities = 15/42 (35%), Positives = 23/42 (54%)
 Frame = +3

Query: 702 QDEQTPS*TIEARQISFADQSLTSAKILSSHYFDDQNMXVTD 827
           Q E+  S   EA +I+     + S + + S YF+DQ+  VTD
Sbjct: 196 QQEKEASNVSEASRIATIPPMILSEEEVKSQYFNDQSRLVTD 237


>SPBC317.01 |mbx2|pvg4|MADS-box transcription factor
           Pvg4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 372

 Score = 27.1 bits (57), Expect = 3.6
 Identities = 11/28 (39%), Positives = 15/28 (53%), Gaps = 2/28 (7%)
 Frame = +3

Query: 561 HHKRTQEP--PPHGSPHRTNWPTQHSWQ 638
           HH  T+ P  PPH   H  N+P  + +Q
Sbjct: 169 HHPHTRPPHHPPHPHFHNNNYPPPYCFQ 196


>SPAC4A8.16c |tif33|SPAC823.01c|translation initiation factor
           eIF3c|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 918

 Score = 26.2 bits (55), Expect = 6.4
 Identities = 14/53 (26%), Positives = 27/53 (50%)
 Frame = +1

Query: 607 EQTGPLSILGNFNHMFDAKTRHDAXKLYSDDVRMNKRLHELLKHDKSRLRIKV 765
           E+  P  I      +F+A+ +    +  S+ +R+ ++L  +   D  RLR+KV
Sbjct: 326 EEITPADIFKYLRAIFEARGKKSTDR--SEQIRLLEKLSTIAVTDYQRLRVKV 376


>SPAC22F8.02c |pvg5|mug50|PvGal biosynthesis protein
           Pvg5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 372

 Score = 26.2 bits (55), Expect = 6.4
 Identities = 18/69 (26%), Positives = 31/69 (44%)
 Frame = +1

Query: 115 FALLTFWFQLAEFTDPPCLIDLECAECIPDNMPLVTSHRATNGTFRIASGDEVVLACYGG 294
           F + +F    AE+ D  C + L+    IPD   LV++   ++  +   SG  V  A    
Sbjct: 170 FKVRSFPINYAEYADDECQLALKKIRPIPDKY-LVSTRVLSDSRYLELSGAVVAFAPDAS 228

Query: 295 KFLMYPLQE 321
             L++ L +
Sbjct: 229 SSLLFELAD 237


>SPBC4.03c |||COPII-coated vesicle component Sfb3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 891

 Score = 26.2 bits (55), Expect = 6.4
 Identities = 18/52 (34%), Positives = 24/52 (46%), Gaps = 4/52 (7%)
 Frame = +1

Query: 136 FQLAEFTDPPCLIDLECAECIPDNMPL-VTSHR---ATNGTFRIASGDEVVL 279
           + L +     CL D E   C+P NMPL V + R      G F I +G +  L
Sbjct: 734 YALHQLQPTDCLPDPENTGCLPINMPLCVRASRKFIEDGGAFLIVTGQKSYL 785


>SPAC17H9.09c |ras1|ste5|GTPase Ras1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 219

 Score = 26.2 bits (55), Expect = 6.4
 Identities = 12/39 (30%), Positives = 22/39 (56%)
 Frame = +3

Query: 759 QSLTSAKILSSHYFDDQNMXVTDSYRTGSRCGGTSPGAL 875
           +S  + +++ SH+ D+ +  + DSYR   +C     GAL
Sbjct: 21  KSALTIQLIQSHFVDEYDPTIEDSYR--KKCEIDGEGAL 57


>SPAC25B8.04c |||mitochondrial splicing suppressor
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 378

 Score = 25.8 bits (54), Expect = 8.4
 Identities = 11/32 (34%), Positives = 20/32 (62%)
 Frame = +2

Query: 569 THPGTTSAWLPTPNKLAHSAFLATLTTCSTQK 664
           +HP  +S+W+PT + L  +     LT+ S+Q+
Sbjct: 282 SHPLYSSSWIPTLHDLVSTRCSVWLTSPSSQR 313


>SPAC1687.22c |puf3|SPAC222.02c|RNA-binding protein Puf3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 732

 Score = 25.8 bits (54), Expect = 8.4
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = -2

Query: 251 LKVPFVARCDVTKGMLSGMHS 189
           L+VPF  R + T   LSG+HS
Sbjct: 146 LEVPFRKRSESTSSSLSGLHS 166


>SPBP22H7.05c |||ATPase with bromodomain protein|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1201

 Score = 25.8 bits (54), Expect = 8.4
 Identities = 9/18 (50%), Positives = 13/18 (72%)
 Frame = -2

Query: 785  QYFSRGQTLIRKRDLSCF 732
            +YF  G T+ RK+D +CF
Sbjct: 949  EYFLSGNTVTRKKDNACF 966


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,603,678
Number of Sequences: 5004
Number of extensions: 73710
Number of successful extensions: 223
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 211
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 223
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 456499320
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)