Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP21_F_L01
         (746 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_01_0213 - 1703682-1703696,1703824-1703919,1704033-1704104,170...    32   0.42 
08_01_0955 + 9478018-9478773                                           31   1.3  
01_06_1548 + 38157796-38157955,38158771-38159252                       28   9.1  
01_02_0012 + 10157964-10158172,10159101-10159182                       28   9.1  

>08_01_0213 -
           1703682-1703696,1703824-1703919,1704033-1704104,
           1704372-1704444,1704508-1704710,1705058-1706330,
           1706800-1706868,1706940-1707088,1707275-1707487,
           1708385-1708669
          Length = 815

 Score = 32.3 bits (70), Expect = 0.42
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = +3

Query: 222 IPPWIASASLVPQWAPCTTIGS 287
           +PPW +     P+W+PCT  G+
Sbjct: 8   LPPWTSPRGAAPRWSPCTPAGA 29


>08_01_0955 + 9478018-9478773
          Length = 251

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 15/42 (35%), Positives = 19/42 (45%)
 Frame = +3

Query: 201 MAQSTLGIPPWIASASLVPQWAPCTTIGSTCLNCTTKQVCTK 326
           +A  TL  PP +  +S  P  APC   GST         CT+
Sbjct: 66  LAAPTLRHPPAVTPSSATPATAPCAGAGSTTTAPPAAWTCTR 107


>01_06_1548 + 38157796-38157955,38158771-38159252
          Length = 213

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 9/33 (27%), Positives = 19/33 (57%)
 Frame = +3

Query: 198 TMAQSTLGIPPWIASASLVPQWAPCTTIGSTCL 296
           ++ +S L +PPW   + +  +W PC  + ++ L
Sbjct: 128 SLRESGLHVPPWRRPSYVQAKWLPCRGVQASAL 160


>01_02_0012 + 10157964-10158172,10159101-10159182
          Length = 96

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 18/55 (32%), Positives = 24/55 (43%)
 Frame = +1

Query: 118 CFMHHASSSFGCPSTCHRWCRRLGRLEQWRSQPLGYLHGSHRPPWYRSGLLAPPS 282
           C     + + GC     R  R L  L+Q R  P G +H   RPP  R+G    P+
Sbjct: 15  CHPASIAVTIGCRPLPRR--RLLSLLDQGRQPPSGVIHCHGRPPPDRAGQHPSPT 67


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,162,646
Number of Sequences: 37544
Number of extensions: 241753
Number of successful extensions: 654
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 645
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 654
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1980691104
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)