Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP21_F_K24
         (972 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    33   0.061
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    33   0.080
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    28   1.7  
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe...    27   3.0  
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    26   9.2  

>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 33.1 bits (72), Expect = 0.061
 Identities = 23/71 (32%), Positives = 24/71 (33%), Gaps = 5/71 (7%)
 Frame = -1

Query: 462 PPPPPPRGXKXXKXXPXPXXPXRXXGGTXPPAPP---TXXQKXXXAPXGXGGPXXPPXXP 292
           PPPPPPR        P P    R    + PPAPP            P G       P  P
Sbjct: 361 PPPPPPRSAPSTGRQPPPLSSSRAV--SNPPAPPPAIPGRSAPALPPLGNASRTSTPPVP 418

Query: 291 X*GGXPP--PP 265
                PP  PP
Sbjct: 419 TPPSLPPSAPP 429



 Score = 32.7 bits (71), Expect = 0.080
 Identities = 23/75 (30%), Positives = 25/75 (33%), Gaps = 5/75 (6%)
 Frame = -1

Query: 459 PPPPPRGXKXXKXXPXPXXPXRXXGGTXPPAPPTXXQ---KXXXAPXGXGGPXXPP--XX 295
           PPPPP   +  +  P P           PP PP            P G   P  PP    
Sbjct: 311 PPPPPPPSRRNRGKP-PIGNGSSNSSLPPPPPPPRSNAAGSIPLPPQGRSAPPPPPPRSA 369

Query: 294 PX*GGXPPPPXXSXA 250
           P  G  PPP   S A
Sbjct: 370 PSTGRQPPPLSSSRA 384



 Score = 31.9 bits (69), Expect = 0.14
 Identities = 21/71 (29%), Positives = 22/71 (30%)
 Frame = -1

Query: 462 PPPPPPRGXKXXKXXPXPXXPXRXXGGTXPPAPPTXXQKXXXAPXGXGGPXXPPXXPX*G 283
           P P PP           P  P     G  P APP         P   G P  PP  P   
Sbjct: 416 PVPTPPSLPPSAPPSLPPSAPPSLPMGA-PAAPPLPPSAPIAPPLPAGMPAAPPLPPAAP 474

Query: 282 GXPPPPXXSXA 250
             PP P  + A
Sbjct: 475 APPPAPAPAPA 485



 Score = 29.5 bits (63), Expect = 0.75
 Identities = 16/47 (34%), Positives = 17/47 (36%)
 Frame = -2

Query: 500 PXXGXXXXXXXXPPPPPPXGXXKXXXXPXXPGPRAGXXGGPXPXPPR 360
           P  G        PPPPPP         P  P  R+     P P PPR
Sbjct: 325 PPIGNGSSNSSLPPPPPPPRSNAAGSIPLPPQGRS----APPPPPPR 367



 Score = 26.6 bits (56), Expect = 5.3
 Identities = 13/35 (37%), Positives = 14/35 (40%)
 Frame = -2

Query: 464 PPPPPPXGXXKXXXXPXXPGPRAGXXGGPXPXPPR 360
           PPPPPP         P   G  +     P P PPR
Sbjct: 311 PPPPPPPSRRNRGKPPIGNG-SSNSSLPPPPPPPR 344


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 32.7 bits (71), Expect = 0.080
 Identities = 15/36 (41%), Positives = 15/36 (41%)
 Frame = -2

Query: 464 PPPPPPXGXXKXXXXPXXPGPRAGXXGGPXPXPPRP 357
           PPPPP          P    P A   GGP P PP P
Sbjct: 733 PPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPP 768



 Score = 32.7 bits (71), Expect = 0.080
 Identities = 15/36 (41%), Positives = 15/36 (41%)
 Frame = -2

Query: 464 PPPPPPXGXXKXXXXPXXPGPRAGXXGGPXPXPPRP 357
           PPPPPP G       P  P P A   GG     P P
Sbjct: 762 PPPPPPPGVAGAGPPPPPPPPPAVSAGGSRYYAPAP 797



 Score = 31.9 bits (69), Expect = 0.14
 Identities = 22/65 (33%), Positives = 22/65 (33%)
 Frame = -1

Query: 462 PPPPPPRGXKXXKXXPXPXXPXRXXGGTXPPAPPTXXQKXXXAPXGXGGPXXPPXXPX*G 283
           PPPPP          P P  P     G  PP PP         P G  G   PP  P   
Sbjct: 733 PPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPP---------PPGVAGAGPPPPPP--- 780

Query: 282 GXPPP 268
             PPP
Sbjct: 781 --PPP 783



 Score = 29.9 bits (64), Expect = 0.57
 Identities = 15/49 (30%), Positives = 15/49 (30%)
 Frame = -2

Query: 503 PPXXGXXXXXXXXPPPPPPXGXXKXXXXPXXPGPRAGXXGGPXPXPPRP 357
           PP           P P PP         P  P P     G P P PP P
Sbjct: 735 PPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPPPP 783



 Score = 27.5 bits (58), Expect = 3.0
 Identities = 9/15 (60%), Positives = 10/15 (66%)
 Frame = -3

Query: 307 PPXXPXLGGXPPXPP 263
           PP  P +GG PP PP
Sbjct: 752 PPPAPIMGGPPPPPP 766



 Score = 26.6 bits (56), Expect = 5.3
 Identities = 14/48 (29%), Positives = 14/48 (29%)
 Frame = -1

Query: 504 PPGXGXXXXXXXXXPPPPPPRGXKXXKXXPXPXXPXRXXGGTXPPAPP 361
           PP            P P PP         P P  P     G  PP PP
Sbjct: 734 PPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPP 781



 Score = 26.6 bits (56), Expect = 5.3
 Identities = 13/37 (35%), Positives = 13/37 (35%)
 Frame = -1

Query: 375 PPAPPTXXQKXXXAPXGXGGPXXPPXXPX*GGXPPPP 265
           P   P        AP   G P  PP     G  PPPP
Sbjct: 742 PTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPP 778


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 28.3 bits (60), Expect = 1.7
 Identities = 10/21 (47%), Positives = 11/21 (52%)
 Frame = -1

Query: 462 PPPPPPRGXKXXKXXPXPXXP 400
           PPPPPP G +     P P  P
Sbjct: 10  PPPPPPPGFEPPSQPPPPPPP 30



 Score = 27.5 bits (58), Expect = 3.0
 Identities = 10/21 (47%), Positives = 10/21 (47%)
 Frame = -3

Query: 463 PPPPPPXGXXXKXXXPXPXXP 401
           PPPPPP G       P P  P
Sbjct: 10  PPPPPPPGFEPPSQPPPPPPP 30


>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 273

 Score = 27.5 bits (58), Expect = 3.0
 Identities = 23/69 (33%), Positives = 23/69 (33%), Gaps = 4/69 (5%)
 Frame = +2

Query: 266 GGGGXPP---*XGXXGGXXGPPXPXGAXXXFCXXVGG-AGGXVPPXXRXGXXGXGXXXLX 433
           G GG PP     G  GG  G     G    F    GG  GG        G  G G     
Sbjct: 196 GSGGPPPGPGGFGGFGGFGGEGHHHGGHGGFGGGPGGFEGGPGGFGGGPGGFGGGLGGFG 255

Query: 434 XXPRGGGGG 460
             P G GGG
Sbjct: 256 GGPGGFGGG 264



 Score = 26.2 bits (55), Expect = 7.0
 Identities = 14/36 (38%), Positives = 14/36 (38%)
 Frame = +1

Query: 358 GRGGXGXGPPXXPARGPGXXGXFXXFXXPXGGGGGG 465
           G GG G GP        G  G    F    GG GGG
Sbjct: 222 GHGGFGGGPGGFEGGPGGFGGGPGGFGGGLGGFGGG 257


>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 25.8 bits (54), Expect = 9.2
 Identities = 19/71 (26%), Positives = 20/71 (28%)
 Frame = -1

Query: 462  PPPPPPRGXKXXKXXPXPXXPXRXXGGTXPPAPPTXXQKXXXAPXGXGGPXXPPXXPX*G 283
            PP P P G            P     G  P   P+       AP        PP      
Sbjct: 1131 PPVPVPSGAPPVPKPSVAAPPVPAPSGAPPVPKPSVAAPPVPAPSSG----IPPVPKPAA 1186

Query: 282  GXPPPPXXSXA 250
            G PP P  S A
Sbjct: 1187 GVPPVPPPSEA 1197


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.312    0.160    0.582 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,389,918
Number of Sequences: 5004
Number of extensions: 19511
Number of successful extensions: 116
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 69
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 499296500
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 43 (22.0 bits)