Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP21_F_K22
         (956 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    32   0.14 
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    32   0.14 
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    29   1.3  
SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr...    28   1.7  
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    27   3.0  
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    26   6.8  

>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 31.9 bits (69), Expect = 0.14
 Identities = 13/22 (59%), Positives = 13/22 (59%), Gaps = 2/22 (9%)
 Frame = +3

Query: 897 PPXGXGPPPPXXGFXPP--PPP 956
           PP    PPPP  GF PP  PPP
Sbjct: 5   PPGNPPPPPPPPGFEPPSQPPP 26



 Score = 26.6 bits (56), Expect = 5.2
 Identities = 12/24 (50%), Positives = 12/24 (50%)
 Frame = +2

Query: 434 PPPPXGXGFXFXGPXXXPPPXTPG 505
           PPPP   GF    P   PPP  PG
Sbjct: 10  PPPPPPPGFE--PPSQPPPPPPPG 31


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 31.9 bits (69), Expect = 0.14
 Identities = 21/74 (28%), Positives = 21/74 (28%), Gaps = 1/74 (1%)
 Frame = +2

Query: 425 LXXPPPPXGXGFXFXGPXXXPPPXTPGPXXSGGGXXXPPXPG-GXLGXPXPXGSPXEXFF 601
           L   PPP         P   P P  P     GG    PP PG    G P P   P     
Sbjct: 728 LLKSPPPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPPPPAVSA 787

Query: 602 XXLXPXGPXPXKRP 643
                  P P   P
Sbjct: 788 GGSRYYAPAPQAEP 801



 Score = 31.1 bits (67), Expect = 0.24
 Identities = 15/50 (30%), Positives = 17/50 (34%)
 Frame = +3

Query: 438 PPPGXGXXLFXAXSXXPXPXXRAPGXRGGXXXXPPPQGXXWVXPPXGGPP 587
           PPP     +    +  P P        GG    PPP G     PP   PP
Sbjct: 732 PPPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPP 781



 Score = 31.1 bits (67), Expect = 0.24
 Identities = 13/30 (43%), Positives = 13/30 (43%)
 Frame = -3

Query: 573 GXGXPKXPPGXGGXXXPPPXSXGPGVXGGG 484
           G   P  PPG  G   PPP    P V  GG
Sbjct: 760 GPPPPPPPPGVAGAGPPPPPPPPPAVSAGG 789



 Score = 29.5 bits (63), Expect = 0.73
 Identities = 16/33 (48%), Positives = 17/33 (51%)
 Frame = +3

Query: 858 GGXFPXXPXXGXSPPXGXGPPPPXXGFXPPPPP 956
           GG  P  P  G +   G GPPPP     PPPPP
Sbjct: 759 GGPPPPPPPPGVA---GAGPPPP-----PPPPP 783



 Score = 28.3 bits (60), Expect = 1.7
 Identities = 17/52 (32%), Positives = 19/52 (36%), Gaps = 3/52 (5%)
 Frame = +1

Query: 613 PPXPXXXKTPPFXGFFPXXPP-PLXX--PXXXPPPXLXGGAPPXXXFKXPRV 759
           PP P      P     P  PP P+    P   PPP + G  PP      P V
Sbjct: 734 PPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPPPPAV 785



 Score = 27.9 bits (59), Expect = 2.2
 Identities = 15/32 (46%), Positives = 15/32 (46%), Gaps = 3/32 (9%)
 Frame = +3

Query: 870 PXXPXXGXSPPXGXGPPPPXX---GFXPPPPP 956
           P  P  G  PP    PPPP     G  PPPPP
Sbjct: 753 PPAPIMGGPPPP---PPPPGVAGAGPPPPPPP 781



 Score = 26.6 bits (56), Expect = 5.2
 Identities = 10/19 (52%), Positives = 10/19 (52%)
 Frame = +3

Query: 900 PXGXGPPPPXXGFXPPPPP 956
           P    PP P  G  PPPPP
Sbjct: 748 PIPVPPPAPIMGGPPPPPP 766



 Score = 25.8 bits (54), Expect = 9.0
 Identities = 17/59 (28%), Positives = 19/59 (32%)
 Frame = -3

Query: 561 PKXPPGXGGXXXPPPXSXGPGVXGGGXXXGPXKXXPXPXGGGGXFXRXKXXXXPPRXRE 385
           P   P  GG   PPP    PGV G G    P        GG   +         P+  E
Sbjct: 752 PPPAPIMGG---PPPPPPPPGVAGAGPPPPPPPPPAVSAGGSRYYAPAPQAEPEPKIDE 807


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 28.7 bits (61), Expect = 1.3
 Identities = 20/74 (27%), Positives = 21/74 (28%)
 Frame = +2

Query: 422 RLXXPPPPXGXGFXFXGPXXXPPPXTPGPXXSGGGXXXPPXPGGXLGXPXPXGSPXEXFF 601
           R   PP P         P   PP   P     G     P  P   +  P P G P     
Sbjct: 411 RTSTPPVPTPPSLPPSAPPSLPPSAPPS-LPMGAPAAPPLPPSAPIAPPLPAGMPAA--- 466

Query: 602 XXLXPXGPXPXKRP 643
             L P  P P   P
Sbjct: 467 PPLPPAAPAPPPAP 480



 Score = 27.9 bits (59), Expect = 2.2
 Identities = 13/36 (36%), Positives = 13/36 (36%)
 Frame = +3

Query: 849 GGGGGXFPXXPXXGXSPPXGXGPPPPXXGFXPPPPP 956
           G      P  P    S   G  P PP     PPPPP
Sbjct: 330 GSSNSSLPPPPPPPRSNAAGSIPLPPQGRSAPPPPP 365


>SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 305

 Score = 28.3 bits (60), Expect = 1.7
 Identities = 15/39 (38%), Positives = 17/39 (43%)
 Frame = -1

Query: 755 RGXLKXXXGGAPPXRXGGGXXXGXXRGGGXFGKXPXKGG 639
           RG  +   GG    R G G   G  RGGG  G    +GG
Sbjct: 11  RGGSRGGRGGFNGGRGGFGGGRGGARGGGRGGARGGRGG 49


>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 27.5 bits (58), Expect = 3.0
 Identities = 34/122 (27%), Positives = 36/122 (29%), Gaps = 7/122 (5%)
 Frame = +1

Query: 388  PXPGGGXXXFXPXKXTPP-PXGXGXXFXGPXPLXPXXXXGPXGXGGGXXXXPXPRGXFGX 564
            P P G      P    PP P   G     P P  P     P     G    P P      
Sbjct: 1115 PAPSGAPPVPKPSVAAPPVPVPSGAP---PVP-KPSVAAPPVPAPSGAPPVPKP-SVAAP 1169

Query: 565  PXPX---GVPXGXIFXXXXPPXPXXXKTPPFXG---FFPXXPPPLXXPXXXPPPXLXGGA 726
            P P    G+P         PP P   + PP        P  PPP   P   P P    G 
Sbjct: 1170 PVPAPSSGIPPVPKPAAGVPPVPPPSEAPPVPKPSVGVPPVPPPSTAP---PVPTPSAGL 1226

Query: 727  PP 732
            PP
Sbjct: 1227 PP 1228


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 26.2 bits (55), Expect = 6.8
 Identities = 14/40 (35%), Positives = 15/40 (37%)
 Frame = +1

Query: 613  PPXPXXXKTPPFXGFFPXXPPPLXXPXXXPPPXLXGGAPP 732
            PP P     PP     P  PP    P   PPP L   + P
Sbjct: 1707 PPPPPMSVPPP-----PSAPPMPAGPPSAPPPPLPASSAP 1741


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,610,913
Number of Sequences: 5004
Number of extensions: 45305
Number of successful extensions: 196
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 44
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 142
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 489310570
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)