Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP21_F_K21
         (936 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB17E12.05 |rpl3703|rpl37|60S ribosomal protein L37|Schizosac...    87   3e-18
SPCC1223.05c |rpl3702|rpl37-2, rpl37|60S ribosomal protein L37|S...    86   8e-18
SPAC23E2.02 |lsd2|swm2, saf140|histone demethylase SWIRM2 |Schiz...    27   2.9  

>SPAPB17E12.05 |rpl3703|rpl37|60S ribosomal protein
           L37|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 89

 Score = 87.0 bits (206), Expect = 3e-18
 Identities = 39/60 (65%), Positives = 44/60 (73%)
 Frame = +1

Query: 157 RHXTFQKSKCAQCGXPAAKLRSYHWSVKAKRRKTTGTGRCVHLKIVRRRFRNGFKEGKPT 336
           R    QKS CA CG PAAK RSY+W  KAKRR+TTGTGR  +LK V R F+NGF+ GKPT
Sbjct: 25  RSFHIQKSTCACCGYPAAKTRSYNWGAKAKRRRTTGTGRMSYLKKVHRSFKNGFRAGKPT 84


>SPCC1223.05c |rpl3702|rpl37-2, rpl37|60S ribosomal protein
           L37|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 91

 Score = 85.8 bits (203), Expect = 8e-18
 Identities = 40/67 (59%), Positives = 45/67 (67%)
 Frame = +1

Query: 157 RHXTFQKSKCAQCGXPAAKLRSYHWSVKAKRRKTTGTGRCVHLKIVRRRFRNGFKEGKPT 336
           R    QKS CA CG PAAK RSY+W  KAKRR+TTGTGR  +LK V R F+NGF+ GKP 
Sbjct: 25  RSFHIQKSTCACCGYPAAKTRSYNWGAKAKRRRTTGTGRMSYLKKVHRSFKNGFRSGKPA 84

Query: 337 PPKKAVA 357
               A A
Sbjct: 85  AAVAASA 91


>SPAC23E2.02 |lsd2|swm2, saf140|histone demethylase SWIRM2
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1273

 Score = 27.5 bits (58), Expect = 2.9
 Identities = 12/37 (32%), Positives = 19/37 (51%)
 Frame = +2

Query: 95   PQASVQRRNXPXPFMQQLWSLVXSHFKNQNAPNVDXL 205
            PQ +    N     +Q+L SL+  HF+N +  + D L
Sbjct: 923  PQMTSSSSNETSHLIQELHSLIVDHFQNDSNSSADLL 959


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,210,484
Number of Sequences: 5004
Number of extensions: 28654
Number of successful extensions: 41
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 40
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 41
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 475330268
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)