Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP21_F_K18
         (927 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC31G5.03 |rps1101|rps11-1|40S ribosomal protein S11|Schizosac...   158   9e-40
SPAC144.11 |rps1102|rps11-2, rps11|40S ribosomal protein S11|Sch...   158   9e-40
SPBC409.14c |mrps17||mitochondrial ribosomal protein subunit S17...    36   0.011
SPBP4H10.09 |rsv1||transcription factor Rsv1 |Schizosaccharomyce...    26   8.7  

>SPAC31G5.03 |rps1101|rps11-1|40S ribosomal protein
           S11|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 152

 Score =  158 bits (384), Expect = 9e-40
 Identities = 73/121 (60%), Positives = 93/121 (76%), Gaps = 1/121 (0%)
 Frame = +1

Query: 79  LSSKMADQTEKAFQKQATVFLNRKGGMKRKDMRHHKNVGLGFKTPREAIEGTYIDKKCPF 258
           +++++  Q+E+AFQKQ  +F N K G  R   R +K+VGLGFKTP EAI G Y+DKKCPF
Sbjct: 1   MATELVVQSERAFQKQPHIFQNAKKGAGR---RWYKDVGLGFKTPAEAIYGEYVDKKCPF 57

Query: 259 TGNVSIRGRILTGVVQKMKMQRTIVIRRDYLHYLPKYNRFEKRHRNMSVHLSPCFR-ERG 435
            G VSIRGRILTG V   KM RTI+IRR+YLH++PKYNR+EKRH+N++ H+SP FR   G
Sbjct: 58  VGQVSIRGRILTGTVVSTKMHRTIIIRREYLHFIPKYNRYEKRHKNLAAHVSPAFRINEG 117

Query: 436 D 438
           D
Sbjct: 118 D 118



 Score = 48.0 bits (109), Expect = 2e-06
 Identities = 19/23 (82%), Positives = 23/23 (100%)
 Frame = +2

Query: 440 GDIVTIGECRPLSKTVRFNVLKV 508
           GD+VT+G+CRPLSKTVRFNVL+V
Sbjct: 117 GDVVTVGQCRPLSKTVRFNVLRV 139


>SPAC144.11 |rps1102|rps11-2, rps11|40S ribosomal protein
           S11|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 152

 Score =  158 bits (384), Expect = 9e-40
 Identities = 73/121 (60%), Positives = 93/121 (76%), Gaps = 1/121 (0%)
 Frame = +1

Query: 79  LSSKMADQTEKAFQKQATVFLNRKGGMKRKDMRHHKNVGLGFKTPREAIEGTYIDKKCPF 258
           +++++  Q+E+AFQKQ  +F N K G  R   R +K+VGLGFKTP EAI G Y+DKKCPF
Sbjct: 1   MATELVVQSERAFQKQPHIFQNAKKGAGR---RWYKDVGLGFKTPAEAIYGEYVDKKCPF 57

Query: 259 TGNVSIRGRILTGVVQKMKMQRTIVIRRDYLHYLPKYNRFEKRHRNMSVHLSPCFR-ERG 435
            G VSIRGRILTG V   KM RTI+IRR+YLH++PKYNR+EKRH+N++ H+SP FR   G
Sbjct: 58  VGQVSIRGRILTGTVVSTKMHRTIIIRREYLHFIPKYNRYEKRHKNLAAHVSPAFRINEG 117

Query: 436 D 438
           D
Sbjct: 118 D 118



 Score = 48.0 bits (109), Expect = 2e-06
 Identities = 19/23 (82%), Positives = 23/23 (100%)
 Frame = +2

Query: 440 GDIVTIGECRPLSKTVRFNVLKV 508
           GD+VT+G+CRPLSKTVRFNVL+V
Sbjct: 117 GDVVTVGQCRPLSKTVRFNVLRV 139


>SPBC409.14c |mrps17||mitochondrial ribosomal protein subunit
           S17|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 90

 Score = 35.5 bits (78), Expect = 0.011
 Identities = 14/27 (51%), Positives = 18/27 (66%)
 Frame = +2

Query: 428 NVEIGDIVTIGECRPLSKTVRFNVLKV 508
           N  +GD VTI  CRP S T RF ++K+
Sbjct: 48  NCNVGDAVTIQPCRPRSATKRFEIIKI 74


>SPBP4H10.09 |rsv1||transcription factor Rsv1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 428

 Score = 25.8 bits (54), Expect = 8.7
 Identities = 14/53 (26%), Positives = 23/53 (43%)
 Frame = +1

Query: 55  SLTPTSFHLSSKMADQTEKAFQKQATVFLNRKGGMKRKDMRHHKNVGLGFKTP 213
           SL+PT     SK+ ++  +     AT  LN+K     +     ++ G    TP
Sbjct: 124 SLSPTDLQAQSKLIEKPRRRSASNATGSLNKKNQDPLRRFSISESAGAAAPTP 176


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,115,576
Number of Sequences: 5004
Number of extensions: 57771
Number of successful extensions: 163
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 159
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 161
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 469338710
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)