Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP21_F_K15
         (913 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X70944-1|CAA50283.1|  707|Homo sapiens PTB-associated splicing f...    31   4.4  
BC027708-1|AAH27708.1|  525|Homo sapiens SFPQ protein protein.         31   4.4  
BC004534-1|AAH04534.2|  634|Homo sapiens SFPQ protein protein.         31   4.4  
AL590434-2|CAI12467.1|  707|Homo sapiens splicing factor proline...    31   4.4  

>X70944-1|CAA50283.1|  707|Homo sapiens PTB-associated splicing
           factor protein.
          Length = 707

 Score = 31.5 bits (68), Expect = 4.4
 Identities = 13/34 (38%), Positives = 19/34 (55%)
 Frame = -2

Query: 852 PLREXXPXPPPEDRXQXVXERGXGRAPXXQTAXP 751
           P ++  P PPP+D  + V  +G G AP   +A P
Sbjct: 93  PHQQQQPPPPPQDSSKPVVAQGPGPAPGVGSAPP 126


>BC027708-1|AAH27708.1|  525|Homo sapiens SFPQ protein protein.
          Length = 525

 Score = 31.5 bits (68), Expect = 4.4
 Identities = 13/34 (38%), Positives = 19/34 (55%)
 Frame = -2

Query: 852 PLREXXPXPPPEDRXQXVXERGXGRAPXXQTAXP 751
           P ++  P PPP+D  + V  +G G AP   +A P
Sbjct: 93  PHQQQQPPPPPQDSSKPVVAQGPGPAPGVGSAPP 126


>BC004534-1|AAH04534.2|  634|Homo sapiens SFPQ protein protein.
          Length = 634

 Score = 31.5 bits (68), Expect = 4.4
 Identities = 13/34 (38%), Positives = 19/34 (55%)
 Frame = -2

Query: 852 PLREXXPXPPPEDRXQXVXERGXGRAPXXQTAXP 751
           P ++  P PPP+D  + V  +G G AP   +A P
Sbjct: 20  PHQQQQPPPPPQDSSKPVVAQGPGPAPGVGSAPP 53


>AL590434-2|CAI12467.1|  707|Homo sapiens splicing factor
           proline/glutamine-rich (polypyrimidine tract binding
           protein as protein.
          Length = 707

 Score = 31.5 bits (68), Expect = 4.4
 Identities = 13/34 (38%), Positives = 19/34 (55%)
 Frame = -2

Query: 852 PLREXXPXPPPEDRXQXVXERGXGRAPXXQTAXP 751
           P ++  P PPP+D  + V  +G G AP   +A P
Sbjct: 93  PHQQQQPPPPPQDSSKPVVAQGPGPAPGVGSAPP 126


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 114,693,561
Number of Sequences: 237096
Number of extensions: 2140981
Number of successful extensions: 4739
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4078
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4728
length of database: 76,859,062
effective HSP length: 90
effective length of database: 55,520,422
effective search space used: 11825849886
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)