Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP21_F_K10
         (905 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC365.07c |||TATA element modulatory factor homolog |Schizosac...    28   2.1  
SPAC1565.01 |||conserved fungal protein|Schizosaccharomyces pomb...    26   6.4  
SPBP8B7.16c |dbp2||ATP-dependent RNA helicase Dbp2|Schizosacchar...    26   6.4  
SPCC1020.05 |||phosphoprotein phosphatase |Schizosaccharomyces p...    26   6.4  
SPCC1442.07c |||ubiquitin/metalloprotease fusion protein|Schizos...    26   8.5  

>SPBC365.07c |||TATA element modulatory factor homolog
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 547

 Score = 27.9 bits (59), Expect = 2.1
 Identities = 18/52 (34%), Positives = 25/52 (48%)
 Frame = -2

Query: 610 SRATNSFSEGNWLQQSADTKYCSSSVAVVRPPLQELCSTAYIPRSANPVTSG 455
           SR + S SE   L  +A ++Y S S AV+ PP +     +     A   TSG
Sbjct: 373 SRISRSASEARKLGINAQSRYASISSAVLSPPSEASRKFSLYESEAISPTSG 424


>SPAC1565.01 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 242

 Score = 26.2 bits (55), Expect = 6.4
 Identities = 14/40 (35%), Positives = 20/40 (50%)
 Frame = +3

Query: 519 GLTTATLEEQYLVSALC*SQLPSEKELVALDPANKPPLVA 638
           G+T   L     +S L     P E+E++  DP+N   LVA
Sbjct: 148 GVTVVVLLGSVYLSTLANRLEPLEREVLVTDPSNPTKLVA 187


>SPBP8B7.16c |dbp2||ATP-dependent RNA helicase
           Dbp2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 550

 Score = 26.2 bits (55), Expect = 6.4
 Identities = 26/78 (33%), Positives = 34/78 (43%), Gaps = 2/78 (2%)
 Frame = -1

Query: 425 PGWTQDDSYRIRRSGRAETGGSCTQ--PSLERTTYTELRYLQREL*ESATLPEGRKADRY 252
           PG T+D  +RI R+GRA   G+      S       EL  +  E  +    P+  +  RY
Sbjct: 447 PGNTEDYVHRIGRTGRAGAKGTAYTYFTSDNAKQARELVSILSEAKQDID-PKLEEMARY 505

Query: 251 PVSGRVGNRRAHEGASRG 198
              GR GN R   G  RG
Sbjct: 506 SSGGRGGNYR-RGGYGRG 522


>SPCC1020.05 |||phosphoprotein phosphatase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 509

 Score = 26.2 bits (55), Expect = 6.4
 Identities = 13/29 (44%), Positives = 16/29 (55%), Gaps = 1/29 (3%)
 Frame = -2

Query: 577 WLQQS-ADTKYCSSSVAVVRPPLQELCST 494
           WL    AD KY    +AV+  PL+E C T
Sbjct: 371 WLSSKVADFKYEPIQMAVLHIPLKEFCET 399


>SPCC1442.07c |||ubiquitin/metalloprotease fusion
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 282

 Score = 25.8 bits (54), Expect = 8.5
 Identities = 16/42 (38%), Positives = 23/42 (54%), Gaps = 2/42 (4%)
 Frame = +3

Query: 60  KRPGTCKKAALLAFFHRLRPPDEHHKNR--RSSQRWRNPTGL 179
           K+P T  K A +  F+ L   D  HK+R  R  +R R+ TG+
Sbjct: 97  KKPHTTPKPASIYTFNELVVLDYPHKDRALRYLERLRDDTGI 138


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,671,487
Number of Sequences: 5004
Number of extensions: 80865
Number of successful extensions: 190
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 186
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 190
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 458501510
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)