Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP21_F_K09
         (918 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1002.03c |gls2||glucosidase II Gls2|Schizosaccharomyces pomb...    27   2.8  
SPCC4E9.01c |rec11|SPCC550.16c|meiotic cohesin complex subunit R...    27   3.7  
SPAC2F3.12c |||conserved eukaryotic protein|Schizosaccharomyces ...    26   8.6  
SPBC336.05c |||S-adenosylmethionine-dependentmethyltransferase|S...    26   8.6  

>SPAC1002.03c |gls2||glucosidase II Gls2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 923

 Score = 27.5 bits (58), Expect = 2.8
 Identities = 18/58 (31%), Positives = 31/58 (53%), Gaps = 5/58 (8%)
 Frame = +2

Query: 518 WDR-TFEERYEKI-KNDSRRPRLKVIVVPHSHNDPGWL---KTFEHYFEWKTKNIINN 676
           WD+ TF      + K DS+  +L VI+ PH  NDP +    +  ++ +  K K+ ++N
Sbjct: 423 WDKATFPNPKAMLEKLDSKSRKLIVILDPHIKNDPNYFVSKELIDYNYAVKDKSGVDN 480


>SPCC4E9.01c |rec11|SPCC550.16c|meiotic cohesin complex subunit
           Rec11|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 923

 Score = 27.1 bits (57), Expect = 3.7
 Identities = 11/30 (36%), Positives = 14/30 (46%)
 Frame = +2

Query: 473 PSFEFQPSWLRTKEFWDRTFEERYEKIKND 562
           PS+ F P     KE W+  FE+ Y     D
Sbjct: 875 PSYFFSPEDTEEKELWNNLFEDWYPNRARD 904


>SPAC2F3.12c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 279

 Score = 25.8 bits (54), Expect = 8.6
 Identities = 15/57 (26%), Positives = 27/57 (47%), Gaps = 2/57 (3%)
 Frame = +2

Query: 452 IDTMSLYPSFEFQPSWLRTKEFWDRTFEERYEKIKNDSRRPRLKVIVVP--HSHNDP 616
           +D  ++ P  E +P+W+  K   ++     YE +K   R+   +    P  H+ NDP
Sbjct: 19  MDLTNVQP-VENKPAWISMKSPLEKEIANEYEALKVTERKEDTQDYNEPELHNSNDP 74


>SPBC336.05c |||S-adenosylmethionine-
           dependentmethyltransferase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 378

 Score = 25.8 bits (54), Expect = 8.6
 Identities = 12/36 (33%), Positives = 15/36 (41%)
 Frame = +2

Query: 635 EHYFEWKTKNIINNIVQKLHQYPNMTFIWTEISFLN 742
           EH FEW  K       +   +YP  T  +T    LN
Sbjct: 175 EHVFEWDRKEFAKWAYKICKRYPEYTVEFTGCGLLN 210


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,689,371
Number of Sequences: 5004
Number of extensions: 76780
Number of successful extensions: 225
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 215
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 224
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 466510270
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)