Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP21_F_K04
         (858 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC970.05 |rpl3601|rpl36-1|60S ribosomal protein L36|Schizosacc...    44   2e-05
SPBC405.07 |rpl3602|rpl36-2, rpl36|60S ribosomal protein L36|Sch...    44   3e-05
SPAC23D3.03c |||GTPase activating protein |Schizosaccharomyces p...    26   7.9  

>SPCC970.05 |rpl3601|rpl36-1|60S ribosomal protein
           L36|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 99

 Score = 44.4 bits (100), Expect = 2e-05
 Identities = 21/46 (45%), Positives = 29/46 (63%)
 Frame = +3

Query: 156 KGITDKAIRIRPARLKGLQTKHSKFVRDLVREVVGHAQYXKXAMEL 293
           K +T + +  RP+R KG  +K + FVR +VREV G A Y +  MEL
Sbjct: 13  KVLTKRQLPERPSRRKGQLSKRTSFVRSIVREVAGFAPYERRVMEL 58


>SPBC405.07 |rpl3602|rpl36-2, rpl36|60S ribosomal protein
           L36|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 99

 Score = 44.0 bits (99), Expect = 3e-05
 Identities = 21/46 (45%), Positives = 29/46 (63%)
 Frame = +3

Query: 156 KGITDKAIRIRPARLKGLQTKHSKFVRDLVREVVGHAQYXKXAMEL 293
           K +T + +  RP+R KG  +K + FVR +VREV G A Y +  MEL
Sbjct: 13  KTLTKRQLPERPSRRKGHLSKRTAFVRSIVREVAGFAPYERRVMEL 58


>SPAC23D3.03c |||GTPase activating protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 472

 Score = 25.8 bits (54), Expect = 7.9
 Identities = 15/50 (30%), Positives = 23/50 (46%)
 Frame = +1

Query: 262 TLNMXRXLWSYXKVSKDKRALXXLKRPIGXPIPAQKERXKXXXVVPPIKK 411
           T N+   L      SK+K+A+  + RP   P  +++E  K       IKK
Sbjct: 111 TFNLPDALLDPGPASKEKQAVLSIGRPSWLPPKSKEEEKKHMREFEQIKK 160


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,581,203
Number of Sequences: 5004
Number of extensions: 24560
Number of successful extensions: 50
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 50
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 50
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 426466470
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)