Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP21_F_K04
         (858 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CR533465-1|CAG38496.1|  105|Homo sapiens RPL36 protein.                61   6e-09
BC091508-1|AAH91508.1|  105|Homo sapiens ribosomal protein L36 p...    61   6e-09
BC004971-1|AAH04971.1|  105|Homo sapiens ribosomal protein L36 p...    61   6e-09
BC003052-1|AAH03052.1|  105|Homo sapiens ribosomal protein L36 p...    61   6e-09
AB061833-1|BAB79471.1|  105|Homo sapiens ribosomal protein L36 p...    61   6e-09
AB046410-1|BAB21256.1|   32|Homo sapiens ribosomal protein L36 p...    31   4.1  

>CR533465-1|CAG38496.1|  105|Homo sapiens RPL36 protein.
          Length = 105

 Score = 60.9 bits (141), Expect = 6e-09
 Identities = 34/70 (48%), Positives = 43/70 (61%)
 Frame = +3

Query: 84  MAPRFEIAVGLRKGHKTTKISAGRKGITDKAIRIRPARLKGLQTKHSKFVRDLVREVVGH 263
           MA R+ +AVGL KGHK TK             + R +R +G  TKH+KFVRD++REV G 
Sbjct: 1   MALRYPMAVGLNKGHKVTK----------NVSKPRHSRRRGRLTKHTKFVRDMIREVCGF 50

Query: 264 AQYXKXAMEL 293
           A Y + AMEL
Sbjct: 51  APYERRAMEL 60



 Score = 34.7 bits (76), Expect = 0.44
 Identities = 16/38 (42%), Positives = 26/38 (68%)
 Frame = +1

Query: 298 KVSKDKRALXXLKRPIGXPIPAQKERXKXXXVVPPIKK 411
           KVSKDKRAL  +K+ +G  I A+++R +   V+  ++K
Sbjct: 62  KVSKDKRALKFIKKRVGTHIRAKRKREELSNVLAAMRK 99


>BC091508-1|AAH91508.1|  105|Homo sapiens ribosomal protein L36
           protein.
          Length = 105

 Score = 60.9 bits (141), Expect = 6e-09
 Identities = 34/70 (48%), Positives = 43/70 (61%)
 Frame = +3

Query: 84  MAPRFEIAVGLRKGHKTTKISAGRKGITDKAIRIRPARLKGLQTKHSKFVRDLVREVVGH 263
           MA R+ +AVGL KGHK TK             + R +R +G  TKH+KFVRD++REV G 
Sbjct: 1   MALRYPMAVGLNKGHKVTK----------NVSKPRHSRRRGRLTKHTKFVRDMIREVCGF 50

Query: 264 AQYXKXAMEL 293
           A Y + AMEL
Sbjct: 51  APYERRAMEL 60



 Score = 34.7 bits (76), Expect = 0.44
 Identities = 16/38 (42%), Positives = 26/38 (68%)
 Frame = +1

Query: 298 KVSKDKRALXXLKRPIGXPIPAQKERXKXXXVVPPIKK 411
           KVSKDKRAL  +K+ +G  I A+++R +   V+  ++K
Sbjct: 62  KVSKDKRALKFIKKRVGTHIRAKRKREELSNVLAAMRK 99


>BC004971-1|AAH04971.1|  105|Homo sapiens ribosomal protein L36
           protein.
          Length = 105

 Score = 60.9 bits (141), Expect = 6e-09
 Identities = 34/70 (48%), Positives = 43/70 (61%)
 Frame = +3

Query: 84  MAPRFEIAVGLRKGHKTTKISAGRKGITDKAIRIRPARLKGLQTKHSKFVRDLVREVVGH 263
           MA R+ +AVGL KGHK TK             + R +R +G  TKH+KFVRD++REV G 
Sbjct: 1   MALRYPMAVGLNKGHKVTK----------NVSKPRHSRRRGRLTKHTKFVRDMIREVCGF 50

Query: 264 AQYXKXAMEL 293
           A Y + AMEL
Sbjct: 51  APYERRAMEL 60



 Score = 34.7 bits (76), Expect = 0.44
 Identities = 16/38 (42%), Positives = 26/38 (68%)
 Frame = +1

Query: 298 KVSKDKRALXXLKRPIGXPIPAQKERXKXXXVVPPIKK 411
           KVSKDKRAL  +K+ +G  I A+++R +   V+  ++K
Sbjct: 62  KVSKDKRALKFIKKRVGTHIRAKRKREELSNVLAAMRK 99


>BC003052-1|AAH03052.1|  105|Homo sapiens ribosomal protein L36
           protein.
          Length = 105

 Score = 60.9 bits (141), Expect = 6e-09
 Identities = 34/70 (48%), Positives = 43/70 (61%)
 Frame = +3

Query: 84  MAPRFEIAVGLRKGHKTTKISAGRKGITDKAIRIRPARLKGLQTKHSKFVRDLVREVVGH 263
           MA R+ +AVGL KGHK TK             + R +R +G  TKH+KFVRD++REV G 
Sbjct: 1   MALRYPMAVGLNKGHKVTK----------NVSKPRHSRRRGRLTKHTKFVRDMIREVCGF 50

Query: 264 AQYXKXAMEL 293
           A Y + AMEL
Sbjct: 51  APYERRAMEL 60



 Score = 34.7 bits (76), Expect = 0.44
 Identities = 16/38 (42%), Positives = 26/38 (68%)
 Frame = +1

Query: 298 KVSKDKRALXXLKRPIGXPIPAQKERXKXXXVVPPIKK 411
           KVSKDKRAL  +K+ +G  I A+++R +   V+  ++K
Sbjct: 62  KVSKDKRALKFIKKRVGTHIRAKRKREELSNVLAAMRK 99


>AB061833-1|BAB79471.1|  105|Homo sapiens ribosomal protein L36
           protein.
          Length = 105

 Score = 60.9 bits (141), Expect = 6e-09
 Identities = 34/70 (48%), Positives = 43/70 (61%)
 Frame = +3

Query: 84  MAPRFEIAVGLRKGHKTTKISAGRKGITDKAIRIRPARLKGLQTKHSKFVRDLVREVVGH 263
           MA R+ +AVGL KGHK TK             + R +R +G  TKH+KFVRD++REV G 
Sbjct: 1   MALRYPMAVGLNKGHKVTK----------NVSKPRHSRRRGRLTKHTKFVRDMIREVCGF 50

Query: 264 AQYXKXAMEL 293
           A Y + AMEL
Sbjct: 51  APYERRAMEL 60



 Score = 34.7 bits (76), Expect = 0.44
 Identities = 16/38 (42%), Positives = 26/38 (68%)
 Frame = +1

Query: 298 KVSKDKRALXXLKRPIGXPIPAQKERXKXXXVVPPIKK 411
           KVSKDKRAL  +K+ +G  I A+++R +   V+  ++K
Sbjct: 62  KVSKDKRALKFIKKRVGTHIRAKRKREELSNVLAAMRK 99


>AB046410-1|BAB21256.1|   32|Homo sapiens ribosomal protein L36
           protein.
          Length = 32

 Score = 31.5 bits (68), Expect = 4.1
 Identities = 14/26 (53%), Positives = 20/26 (76%)
 Frame = +1

Query: 298 KVSKDKRALXXLKRPIGXPIPAQKER 375
           KVSKDKRAL  +K+ +G  I A+++R
Sbjct: 2   KVSKDKRALKFIKKRVGTHIRAKRKR 27


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 58,357,621
Number of Sequences: 237096
Number of extensions: 947211
Number of successful extensions: 1403
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1364
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1395
length of database: 76,859,062
effective HSP length: 89
effective length of database: 55,757,518
effective search space used: 10928473528
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)