Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP21_F_K04
         (858 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              24   2.1  
U15954-1|AAA67442.1|   53|Apis mellifera abaecin precursor protein.    22   6.3  

>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 23.8 bits (49), Expect = 2.1
 Identities = 30/107 (28%), Positives = 43/107 (40%), Gaps = 11/107 (10%)
 Frame = +3

Query: 84   MAPRFEIAVGLRKGHKTTKISAGRKGITDKAIRIRPAR---LKGLQ--TKHSKFVR---- 236
            M+P    A G+  G+K   I +G  GI  K  +I  +    L GL+  T +S  V     
Sbjct: 1103 MSPPLSAANGVITGYKVIVIPSGG-GIYTKDTKITSSSETILHGLKKYTNYSMQVLAFTS 1161

Query: 237  --DLVREVVGHAQYXKXAMELX*GVKRQACSEXXETTNWXXHSRPKG 371
              D V+    H Q  + A E    +K    S      +W   S+P G
Sbjct: 1162 GGDGVKSAPIHCQTEQDAPEAPIAIKALVMSSESILVSWRPPSQPNG 1208


>U15954-1|AAA67442.1|   53|Apis mellifera abaecin precursor protein.
          Length = 53

 Score = 22.2 bits (45), Expect = 6.3
 Identities = 9/17 (52%), Positives = 11/17 (64%)
 Frame = +2

Query: 113 PAKRPQNN*NIRWPQGY 163
           P + P N   I+WPQGY
Sbjct: 38  PGQGPFNP-KIKWPQGY 53


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 105,863
Number of Sequences: 438
Number of extensions: 1874
Number of successful extensions: 4
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 27673956
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)