Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP21_F_K01
(1143 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 34 0.042
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 30 0.52
SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr... 29 1.2
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M... 28 2.8
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ... 26 8.5
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 33.9 bits (74), Expect = 0.042
Identities = 23/74 (31%), Positives = 26/74 (35%), Gaps = 2/74 (2%)
Frame = +2
Query: 761 PPPPXXPPXXPPXLXXLXXXPPPXPXXLFSXXLSXXSXXXPXXPPLXPXXPTXXXL--SX 934
P PP PP PP L PP P + + P PPL P L +
Sbjct: 418 PTPPSLPPSAPPSLP--PSAPPSLP--MGAPAAPPLPPSAPIAPPLPAGMPAAPPLPPAA 473
Query: 935 XPPPPXXXPXPXXP 976
PPP P P P
Sbjct: 474 PAPPPAPAPAPAAP 487
Score = 29.9 bits (64), Expect = 0.69
Identities = 33/134 (24%), Positives = 37/134 (27%), Gaps = 5/134 (3%)
Frame = +2
Query: 722 SLPLXXSLXSXXXPPPPXXPP---XXPPXL--XXLXXXPPPXPXXLFSXXLSXXSXXXPX 886
S+PL S PPPP P PP L PP P +
Sbjct: 350 SIPLPPQGRSAPPPPPPRSAPSTGRQPPPLSSSRAVSNPPAPPPAIPGRSAPALPPLGNA 409
Query: 887 XPPLXPXXPTXXXLSXXPPPPXXXPXPXXPXFLFXXFXXXXFSXPXXPSLSYXLLFXXXP 1066
P PT L PP P S P P L + P
Sbjct: 410 SRTSTPPVPTPPSLPPSAPPSLPPSAPPSLPMGAPAAPPLPPSAPIAPPLPAGM-----P 464
Query: 1067 LPXPXPPSPXXPPP 1108
P PP+ PPP
Sbjct: 465 AAPPLPPAAPAPPP 478
Score = 28.3 bits (60), Expect = 2.1
Identities = 29/118 (24%), Positives = 33/118 (27%), Gaps = 3/118 (2%)
Frame = +2
Query: 770 PXXPPXXPPXLXXLXXXP--PPXPXXLFSXXLSXXSXXXPXXPPLXPXXPTXXXLSXXP- 940
P PP PP + P PP P S + S P PP +
Sbjct: 251 PAPPPIPPPSNGTVSSPPNSPPRPIAPVSMNPAINSTSKPPLPPPSSRVSAAALAANKKR 310
Query: 941 PPPXXXPXPXXPXFLFXXFXXXXFSXPXXPSLSYXLLFXXXPLPXPXPPSPXXPPPXS 1114
PPP P S P P PLP +P PPP S
Sbjct: 311 PPPPPPPSRRNRGKPPIGNGSSNSSLPPPPPPPRSNAAGSIPLPPQGRSAPPPPPPRS 368
Score = 26.6 bits (56), Expect = 6.4
Identities = 24/113 (21%), Positives = 32/113 (28%)
Frame = +3
Query: 753 PXPXPLPXXLPXXLXXXXLSXSPPPXXLXXSSLXXSXXXPXXXPXXPLSSLSXPPXXXSP 932
P P +P P + +PPP + S P P P++ +S P S
Sbjct: 231 PIPPSIPSSRPPERVPSLSAPAPPPIPPPSNGTVSS---PPNSPPRPIAPVSMNPAINST 287
Query: 933 XXXPPPSXXPXXXXPFSFFXXSXXPPSPXPXXPXXXXXXXXXXXXXXXPLPPP 1091
P P + PP P P LPPP
Sbjct: 288 SKPPLPPPSSRVSAA-ALAANKKRPPPPPPPSRRNRGKPPIGNGSSNSSLPPP 339
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 30.3 bits (65), Expect = 0.52
Identities = 25/88 (28%), Positives = 29/88 (32%)
Frame = +3
Query: 759 PXPLPXXLPXXLXXXXLSXSPPPXXLXXSSLXXSXXXPXXXPXXPLSSLSXPPXXXSPXX 938
P P+P P + S PP SS S P P P+ + S P P
Sbjct: 1042 PVPIPTSTPPVPKSSSGAPSAPPPVPAPSSEIPSIPAPSGAP--PVPAPSGIPPVPKPSV 1099
Query: 939 XPPPSXXPXXXXPFSFFXXSXXPPSPXP 1022
PP P P S PP P P
Sbjct: 1100 AAPPVPKPSVAVP-PVPAPSGAPPVPKP 1126
>SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 305
Score = 29.1 bits (62), Expect = 1.2
Identities = 19/53 (35%), Positives = 19/53 (35%), Gaps = 2/53 (3%)
Frame = -1
Query: 912 GXXGXRGGXXGXXXXXXERXXEKRXXGXGGGXXXRXXRXG--GXXGGXXGGGG 760
G G RGG G R G GG R R G G GG GG G
Sbjct: 13 GSRGGRGGFNGGRGGFGGGRGGARGGGRGGARGGRGGRGGARGGRGGSSGGRG 65
>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 309
Score = 27.9 bits (59), Expect = 2.8
Identities = 17/67 (25%), Positives = 18/67 (26%)
Frame = +2
Query: 761 PPPPXXPPXXPPXLXXLXXXPPPXPXXLFSXXLSXXSXXXPXXPPLXPXXPTXXXLSXXP 940
PP P PP P + PP P L P P P P
Sbjct: 144 PPRPSIPPPSPASAPPIPSKAPPIPSSLPPPAQPAAPVKSPPSAPSLPSAVPPMPPKVPP 203
Query: 941 PPPXXXP 961
PP P
Sbjct: 204 PPLSQAP 210
>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1420
Score = 26.2 bits (55), Expect = 8.5
Identities = 10/17 (58%), Positives = 10/17 (58%)
Frame = +2
Query: 1064 PLPXPXPPSPXXPPPXS 1114
PLP P PP P PP S
Sbjct: 234 PLPAPPPPPPPTLPPQS 250
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,526,674
Number of Sequences: 5004
Number of extensions: 18715
Number of successful extensions: 235
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 50
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 175
length of database: 2,362,478
effective HSP length: 74
effective length of database: 1,992,182
effective search space used: 609607692
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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