Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP21_F_J24
         (902 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_02_0057 + 7851500-7852041,7852190-7852622,7853702-7854496           29   5.1  
09_04_0087 + 14476539-14476675,14478876-14479635,14479720-144798...    28   8.8  

>11_02_0057 + 7851500-7852041,7852190-7852622,7853702-7854496
          Length = 589

 Score = 29.1 bits (62), Expect = 5.1
 Identities = 17/62 (27%), Positives = 27/62 (43%)
 Frame = -2

Query: 601 WSEFLTGLHSRRNTTPDLDNYPYIVIQNLVVSAQKLFFNILNLLWRNKSIPQSWKTVCCP 422
           W+    GLHSR        N+  I+   L +SA K F ++ +     K   +++   C P
Sbjct: 209 WALKCIGLHSRVRENKGRGNHGTIIEVQLQLSAFKTFLDLADNDLTGKDFTEAFDAACFP 268

Query: 421 NT 416
            T
Sbjct: 269 LT 270


>09_04_0087 +
           14476539-14476675,14478876-14479635,14479720-14479871,
           14479958-14480024,14480632-14480831,14480915-14481068,
           14481585-14481669,14481766-14481857,14482575-14482766,
           14482867-14482992,14483072-14483125,14483494-14483550,
           14484509-14484606,14484703-14485038,14485116-14485203,
           14486891-14487016,14487082-14487138,14488054-14488133,
           14488228-14488270,14488948-14489034,14489331-14489420,
           14489996-14490054,14490141-14490231,14490330-14490495,
           14490662-14490755,14491787-14492909
          Length = 1537

 Score = 28.3 bits (60), Expect = 8.8
 Identities = 13/39 (33%), Positives = 20/39 (51%)
 Frame = -2

Query: 532 IVIQNLVVSAQKLFFNILNLLWRNKSIPQSWKTVCCPNT 416
           + I+N++V  Q   F   +  W+N    QSW +V C  T
Sbjct: 66  MTIRNILVDGQAAEFEY-SPQWKNAGDQQSWSSVSCSKT 103


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,594,155
Number of Sequences: 37544
Number of extensions: 319541
Number of successful extensions: 480
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 476
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 480
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2553813320
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)