Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP21_F_J17
         (918 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC637.07 |moe1||translation initiation factor eIF3d Moe1|Schiz...    31   0.30 
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    29   1.2  
SPAC9E9.12c |ybt1|abc1|ABC transporter Ybt1|Schizosaccharomyces ...    27   3.7  
SPCC584.04 |sup35|erf3|translation release factor eRF3 |Schizosa...    27   3.7  
SPAC32A11.02c |||conserved fungal protein|Schizosaccharomyces po...    27   3.7  
SPAC6G9.10c |sen1||ATP-dependent 5' to 3' DNA/RNA helicase Sen1|...    27   4.9  
SPBC23E6.09 |ssn6||transcriptional corepressor Ssn6|Schizosaccha...    27   4.9  
SPBC216.02 |mcp5|num1, mug21|cortical anchoring factor for dynei...    26   6.5  

>SPAC637.07 |moe1||translation initiation factor eIF3d
           Moe1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 567

 Score = 30.7 bits (66), Expect = 0.30
 Identities = 25/97 (25%), Positives = 44/97 (45%), Gaps = 3/97 (3%)
 Frame = +1

Query: 463 VNSEGSWVYEKDVLKITFPLKQ-KQPEDSKRPVAEPTETTSTNVSREEMEFTTESNV--R 633
           VNS G+   E   +   F ++  ++ E+ K  +  P    +   S+EE E         R
Sbjct: 323 VNSPGALSVEATYINQNFCVQALRETEEEKYKLPHPNPFYN---SKEESEPLAAHGYIYR 379

Query: 634 DVDVGLETAQKTNEIAKAVXANTYAVNIRDDAEFLPI 744
           DVD+ LET +K  ++      + Y  N  +D +++ I
Sbjct: 380 DVDLSLETDEKPVKLMVRTEVDGYVKNPANDVQYISI 416


>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 534

 Score = 28.7 bits (61), Expect = 1.2
 Identities = 22/65 (33%), Positives = 33/65 (50%)
 Frame = -2

Query: 731 SASSLMLTAYVFAXTAFAISLVFWAVSKPTSTSRTLLSVVNSISSRLTFVEVVSVGSATG 552
           S+SS   TA   + ++  IS    + S PTSTS T+ S  +S SS  +    +S  S++ 
Sbjct: 255 SSSSSSSTASSSSSSSSIISSSSSSSSSPTSTSSTISSSSSSSSSPTSTSSTISSSSSSS 314

Query: 551 LLLSS 537
              SS
Sbjct: 315 SSFSS 319


>SPAC9E9.12c |ybt1|abc1|ABC transporter Ybt1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1427

 Score = 27.1 bits (57), Expect = 3.7
 Identities = 14/42 (33%), Positives = 23/42 (54%)
 Frame = -2

Query: 668 VFWAVSKPTSTSRTLLSVVNSISSRLTFVEVVSVGSATGLLL 543
           V+WA+   T      L++++S+    T    +SV +A GLLL
Sbjct: 88  VWWAIRTITHLEIVGLNILSSLKYGSTLFSWISVANAFGLLL 129


>SPCC584.04 |sup35|erf3|translation release factor eRF3
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 662

 Score = 27.1 bits (57), Expect = 3.7
 Identities = 16/33 (48%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
 Frame = +2

Query: 125 PRHSTTMARHIGRITITT-PSVLTFGKACWTHI 220
           P H+TT  R I +I I   PS+LT G +C  HI
Sbjct: 553 PVHATT--RFIAQIAILELPSILTTGYSCVMHI 583


>SPAC32A11.02c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 851

 Score = 27.1 bits (57), Expect = 3.7
 Identities = 16/65 (24%), Positives = 31/65 (47%)
 Frame = +1

Query: 199 ESMLDTHSLWSNLANEMQHLDNMMKELSLKFPSIINEGRVEGDKYQISIHLPGYEQKDIN 378
           E   + + +W+++  +MQ  D   ++L   F  I N G++     Q +I L G +  ++ 
Sbjct: 104 EGSTNVNEVWNDITEDMQSQDFSTEDLKQLFLLIFNNGKLR-TLLQNAIVLLGQQTTNVA 162

Query: 379 VKAKN 393
            K  N
Sbjct: 163 SKKLN 167


>SPAC6G9.10c |sen1||ATP-dependent 5' to 3' DNA/RNA helicase
            Sen1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1687

 Score = 26.6 bits (56), Expect = 4.9
 Identities = 18/52 (34%), Positives = 28/52 (53%)
 Frame = +1

Query: 163  YHHYDPFSPYVRESMLDTHSLWSNLANEMQHLDNMMKELSLKFPSIINEGRV 318
            +  Y  F    +E   +T S + NL  E+++L NM+ EL  KFP +   GR+
Sbjct: 1484 FTQYRLFDVRGKERTSNTMSTY-NL-EEVEYLVNMVDELLNKFPDVNFTGRI 1533


>SPBC23E6.09 |ssn6||transcriptional corepressor
            Ssn6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1102

 Score = 26.6 bits (56), Expect = 4.9
 Identities = 11/41 (26%), Positives = 23/41 (56%)
 Frame = +1

Query: 520  LKQKQPEDSKRPVAEPTETTSTNVSREEMEFTTESNVRDVD 642
            +K ++PE + +PV    +  ST  + +E E T +++V   +
Sbjct: 908  IKPQKPEPALKPVEGTADPKSTKRNHQETEKTADTDVSSTE 948


>SPBC216.02 |mcp5|num1, mug21|cortical anchoring factor for dynein
           Mcp5/Num1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 968

 Score = 26.2 bits (55), Expect = 6.5
 Identities = 13/59 (22%), Positives = 30/59 (50%)
 Frame = +1

Query: 586 NVSREEMEFTTESNVRDVDVGLETAQKTNEIAKAVXANTYAVNIRDDAEFLPIHINLIK 762
           N++ EE+  T    ++  D+ +E  + TN  +++   + Y+V   +      I +NL++
Sbjct: 77  NLAEEEVRITEMLTIQRQDIAIERRKNTNCFSESSQVDQYSVTETNLQYATNIGLNLLQ 135


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,281,626
Number of Sequences: 5004
Number of extensions: 64723
Number of successful extensions: 209
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 201
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 209
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 466510270
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)