Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP21_F_J15
         (936 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    31   0.31 
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe...    29   1.2  
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    29   1.2  
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    27   5.0  

>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 30.7 bits (66), Expect = 0.31
 Identities = 11/18 (61%), Positives = 11/18 (61%)
 Frame = +3

Query: 492 PPPXGXXGFXXGPPPPPP 545
           PPP G  G    PPPPPP
Sbjct: 765 PPPPGVAGAGPPPPPPPP 782



 Score = 27.5 bits (58), Expect = 2.9
 Identities = 15/50 (30%), Positives = 16/50 (32%)
 Frame = -2

Query: 686 PXPXPPXXKIFFPXXXXPGXGXXXFPPPXGGXXPPPPPXXXXLXXFXGGR 537
           P P P    +  P     G      PP   G  PPPPP         G R
Sbjct: 742 PTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPPPPAVSAGGSR 791



 Score = 26.2 bits (55), Expect = 6.6
 Identities = 11/18 (61%), Positives = 11/18 (61%)
 Frame = +3

Query: 492 PPPXGXXGFXXGPPPPPP 545
           PPP    G   GPPPPPP
Sbjct: 752 PPPAPIMG---GPPPPPP 766


>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 273

 Score = 28.7 bits (61), Expect = 1.2
 Identities = 18/53 (33%), Positives = 18/53 (33%), Gaps = 3/53 (5%)
 Frame = +2

Query: 503 GGXGXXXGXPPPSPXKKXQXXXXGGGG---GDXXPXGGGENXXXPXPGXXXXG 652
           GG G   G PPP P         GG G   G     GGG       PG    G
Sbjct: 191 GGFGGGSGGPPPGPGGFGGFGGFGGEGHHHGGHGGFGGGPGGFEGGPGGFGGG 243



 Score = 27.9 bits (59), Expect = 2.2
 Identities = 19/61 (31%), Positives = 20/61 (32%)
 Frame = +1

Query: 541 PPKKXXXXXXXGGGGGXXPPXGGGKXXXPXPGXXKXGKKIFXXGGXGXGPKXKKXXGGGG 720
           PP         GG GG     GG       PG  + G   F  G  G G       GG G
Sbjct: 200 PPPGPGGFGGFGGFGGEGHHHGGHGGFGGGPGGFEGGPGGFGGGPGGFGGGLGGFGGGPG 259

Query: 721 G 723
           G
Sbjct: 260 G 260



 Score = 27.1 bits (57), Expect = 3.8
 Identities = 18/50 (36%), Positives = 19/50 (38%)
 Frame = +1

Query: 574 GGGGGXXPPXGGGKXXXPXPGXXKXGKKIFXXGGXGXGPKXKKXXGGGGG 723
           GGG G  PP  GG       G    G      GG G GP   +   GG G
Sbjct: 194 GGGSGGPPPGPGG--FGGFGGFGGEGHHHGGHGGFGGGPGGFEGGPGGFG 241


>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 28.7 bits (61), Expect = 1.2
 Identities = 12/36 (33%), Positives = 13/36 (36%)
 Frame = -2

Query: 680  PXPPXXKIFFPXXXXPGXGXXXFPPPXGGXXPPPPP 573
            P  P   +  P    P  G    P P  G  P PPP
Sbjct: 1159 PPVPKPSVAAPPVPAPSSGIPPVPKPAAGVPPVPPP 1194


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 26.6 bits (56), Expect = 5.0
 Identities = 12/25 (48%), Positives = 12/25 (48%), Gaps = 2/25 (8%)
 Frame = +3

Query: 477 PKKKXPPPXGXXGFXXG--PPPPPP 545
           P    PPP    GF     PPPPPP
Sbjct: 5   PPGNPPPPPPPPGFEPPSQPPPPPP 29



 Score = 26.6 bits (56), Expect = 5.0
 Identities = 10/18 (55%), Positives = 10/18 (55%)
 Frame = +3

Query: 492 PPPXGXXGFXXGPPPPPP 545
           PPP G       PPPPPP
Sbjct: 13  PPPPGFEPPSQPPPPPPP 30


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,864,719
Number of Sequences: 5004
Number of extensions: 25677
Number of successful extensions: 153
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 32
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 115
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 475330268
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)