Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP21_F_J07
         (900 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1...    34   0.024
SPAC19A8.12 |dcp2||mRNA decapping complex subunit Dcp2|Schizosac...    33   0.055
SPBC3B9.04 |||mitochondrial methyltransferase |Schizosaccharomyc...    27   3.6  
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    26   6.3  
SPAC16A10.03c |||zinc finger protein Pep5/Vps11 |Schizosaccharom...    26   8.4  

>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 800

 Score = 34.3 bits (75), Expect = 0.024
 Identities = 19/76 (25%), Positives = 25/76 (32%)
 Frame = +1

Query: 163 PPGGGHTNIFDSEPEPPRTGRRAVPPSATSTFSHGQGDEPKATNGTSVATNGQSTPKESP 342
           PP G  T        P  T   + PP   ST S G    P  +  TS  T+    P  + 
Sbjct: 346 PPTGNSTTPVTPTVPPTSTSSTSTPPPPASTSSTGTSSSPLLSTSTSCTTSTSIPPTGNS 405

Query: 343 EPQIQQETPAAAERAP 390
              +    P  +   P
Sbjct: 406 TTPVTPTVPPTSSSTP 421



 Score = 31.9 bits (69), Expect = 0.13
 Identities = 18/69 (26%), Positives = 23/69 (33%)
 Frame = +1

Query: 163 PPGGGHTNIFDSEPEPPRTGRRAVPPSATSTFSHGQGDEPKATNGTSVATNGQSTPKESP 342
           PP G  T        P  T   + PP   ST S G    P  +  TS  T+    P  + 
Sbjct: 292 PPTGNSTTPVTPTVPPTSTSSTSTPPPPASTSSTGTSSSPLPSTSTSCTTSTSIPPTGNS 351

Query: 343 EPQIQQETP 369
              +    P
Sbjct: 352 TTPVTPTVP 360



 Score = 27.1 bits (57), Expect = 3.6
 Identities = 17/59 (28%), Positives = 23/59 (38%), Gaps = 3/59 (5%)
 Frame = +1

Query: 163 PPGGGHTNI---FDSEPEPPRTGRRAVPPSATSTFSHGQGDEPKATNGTSVATNGQSTP 330
           PP GG +++         P  T   ++P   TST S      P  T  TS  T+    P
Sbjct: 122 PPTGGSSSLSTPITPTVPPTSTSSTSIPIPPTSTSSTDTNSNPLPTTSTSCTTSTSIPP 180


>SPAC19A8.12 |dcp2||mRNA decapping complex subunit
           Dcp2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 741

 Score = 33.1 bits (72), Expect = 0.055
 Identities = 18/52 (34%), Positives = 26/52 (50%), Gaps = 1/52 (1%)
 Frame = +1

Query: 235 PPSATSTFSHGQGDEPKATNGTSVA-TNGQSTPKESPEPQIQQETPAAAERA 387
           PP++TS  S+G G  P+   G+S    NG  T + S  P  Q +T   A  +
Sbjct: 420 PPTSTSVSSYGLGKTPQPAYGSSSPYVNGHQTQQISSLPPFQSQTQFLARNS 471


>SPBC3B9.04 |||mitochondrial methyltransferase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 248

 Score = 27.1 bits (57), Expect = 3.6
 Identities = 12/34 (35%), Positives = 19/34 (55%)
 Frame = +1

Query: 499 PHPLAVSLYNQIFDFHLTHIMSQICIEAKFFLRY 600
           P+  ++S+YNQI D +   I  +      +FLRY
Sbjct: 45  PNSNSISIYNQIADKYSRKITREEIFSGIYFLRY 78


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 26.2 bits (55), Expect = 6.3
 Identities = 17/60 (28%), Positives = 26/60 (43%)
 Frame = +1

Query: 163 PPGGGHTNIFDSEPEPPRTGRRAVPPSATSTFSHGQGDEPKATNGTSVATNGQSTPKESP 342
           PP    +N   S P PP+ GR A PP    + +   G +P   + +   +N  + P   P
Sbjct: 339 PPPPPRSNAAGSIPLPPQ-GRSAPPPPPPRS-APSTGRQPPPLSSSRAVSNPPAPPPAIP 396


>SPAC16A10.03c |||zinc finger protein Pep5/Vps11
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 860

 Score = 25.8 bits (54), Expect = 8.4
 Identities = 19/55 (34%), Positives = 29/55 (52%), Gaps = 6/55 (10%)
 Frame = +3

Query: 534 LRFSFNSHYVTNMYRG*VF--LE---VRFRLPF*NSA-IVIKDAQNNVCFLLCLL 680
           L+F      +TN Y   ++  LE   ++FR+P  +   I++KD   N CFL  LL
Sbjct: 697 LKFFVRERSITNKYEDILYKILEACFMQFRIPIQHVLNILVKDGTLNFCFLKPLL 751


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,867,797
Number of Sequences: 5004
Number of extensions: 53828
Number of successful extensions: 182
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 173
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 181
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 454497130
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)