Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP21_F_J07
         (900 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor ...    23   3.8  
DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride...    22   8.8  
AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.            22   8.8  

>AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor A
           isoform protein.
          Length = 567

 Score = 23.0 bits (47), Expect = 3.8
 Identities = 11/43 (25%), Positives = 19/43 (44%)
 Frame = +1

Query: 235 PPSATSTFSHGQGDEPKATNGTSVATNGQSTPKESPEPQIQQE 363
           P S  S     +  +P + NG   +    +  K+ P P+ Q+E
Sbjct: 143 PYSPNSKIGRDELSQPGSLNGYGSSDGCDARKKKGPTPRQQEE 185


>DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride
           channel variant 1 protein.
          Length = 509

 Score = 21.8 bits (44), Expect = 8.8
 Identities = 18/70 (25%), Positives = 29/70 (41%), Gaps = 3/70 (4%)
 Frame = +1

Query: 115 TLASMTELVYQAGXLRPPGGGHTNIFDSEPEPPRTGRRAVPPSATSTFSHGQ---GDEPK 285
           TLA     + +A  +   G     I D+     R  +R +PP   + F  G    GD   
Sbjct: 40  TLALTLVTLVRAEDIFEDGKSDKEILDNLLLSTRYDKRLLPPVQDADFCCGMRWPGDATG 99

Query: 286 ATNGTSVATN 315
            +N +S ++N
Sbjct: 100 LSNRSSTSSN 109


>AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.
          Length = 493

 Score = 21.8 bits (44), Expect = 8.8
 Identities = 10/26 (38%), Positives = 13/26 (50%)
 Frame = -3

Query: 112 NGVEVILFFYLSLHTSLLFDXNQNLK 35
           NG+  ++ F  S   S  F  N NLK
Sbjct: 259 NGIGAVIEFKYSYEISNAFRGNNNLK 284


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 195,822
Number of Sequences: 438
Number of extensions: 4049
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 29146299
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)