Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP21_F_J06
         (908 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC660.16 |||phosphogluconate dehydrogenase, decarboxylating |S...    38   0.001
SPBC19G7.18c ||SPBC19G7.11c|sequence orphan|Schizosaccharomyces ...    28   1.6  
SPAC4G9.04c |||cleavage and polyadenylation specificity factor |...    27   4.9  
SPBC4.05 |mlo2||zinc finger protein Mlo2|Schizosaccharomyces pom...    26   8.5  
SPAC57A7.04c |pabp||mRNA export shuttling protein |Schizosacchar...    26   8.5  

>SPBC660.16 |||phosphogluconate dehydrogenase, decarboxylating
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 492

 Score = 38.3 bits (85), Expect = 0.001
 Identities = 39/156 (25%), Positives = 65/156 (41%), Gaps = 7/156 (4%)
 Frame = +3

Query: 204 LGNMGGFMAANLVKKGFTVRGYDPSKDALNAAAKNGVTPANSIXXXXXXXXXXXSILTSN 383
           L  MG  +  N   KGFTV  Y+ +   ++    N      SI            +    
Sbjct: 14  LAVMGQNLILNGADKGFTVCCYNRTTSRVDEFLANEAK-GKSIVGAHSLEEFVSKLKKPR 72

Query: 384 KVVLDVYLGK------DGVVAHAKKGSLLIDSSTID-PNVPKQIFPIALEKGLGFTDAPV 542
             +L V  GK      +G+    +KG +++D      P+  ++   +A +KG+ F  + V
Sbjct: 73  VCILLVKAGKPVDYLIEGLAPLLEKGDIIVDGGNSHYPDTTRRCEELA-KKGILFVGSGV 131

Query: 543 SGGVMGAQNATLAFMAGGRKEDFERSLPLLKVMGAK 650
           SGG  GA+    + M GG    + R  P+ + + AK
Sbjct: 132 SGGEEGARYGP-SLMPGGNPAAWPRIKPIFQTLAAK 166


>SPBC19G7.18c ||SPBC19G7.11c|sequence orphan|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 252

 Score = 28.3 bits (60), Expect = 1.6
 Identities = 17/45 (37%), Positives = 25/45 (55%)
 Frame = -2

Query: 637 TLRRGRDLSKSSLRPPAMKARVAF*APMTPPDTGASVNPSPFSKA 503
           T+R+GR  S SS  PP       +  P + P+TGAS +  PF+ +
Sbjct: 110 TMRQGRFPSSSSEFPPKNSK---YQLPGSMPNTGASSSQDPFTNS 151


>SPAC4G9.04c |||cleavage and polyadenylation specificity factor
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 638

 Score = 26.6 bits (56), Expect = 4.9
 Identities = 13/28 (46%), Positives = 16/28 (57%)
 Frame = -2

Query: 664 PQWNCLAPITLRRGRDLSKSSLRPPAMK 581
           PQ +C   ++L    DLSKSSL  P  K
Sbjct: 383 PQASCTEAVSLTADIDLSKSSLATPRPK 410


>SPBC4.05 |mlo2||zinc finger protein Mlo2|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 329

 Score = 25.8 bits (54), Expect = 8.5
 Identities = 16/70 (22%), Positives = 31/70 (44%), Gaps = 1/70 (1%)
 Frame = -1

Query: 839 QYTSVDQERADEL-FSTSNRTFGSSPILMPMFMQISCSHSGDAHQHVIGQLSHLS*ADLS 663
           Q   +++E  + L +S    T+    +  P++  ++C  +  +   V    S    AD  
Sbjct: 16  QQRELEREAREVLPYSFDTCTYSMGYLKQPLYACLTCQKASGSLNAVCYSCSISCHADHD 75

Query: 662 AVELFSSHHF 633
            V+LF+  HF
Sbjct: 76  LVDLFNKRHF 85


>SPAC57A7.04c |pabp||mRNA export shuttling protein
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 653

 Score = 25.8 bits (54), Expect = 8.5
 Identities = 14/46 (30%), Positives = 17/46 (36%)
 Frame = -2

Query: 811 PMSCSARPTEPSVRVPF*CPCSCRSAVAIPVMPINMXLVSLATCPE 674
           P+    RP      VP   P    +  A+P MP       LA  PE
Sbjct: 537 PVPAQGRPMMMPGSVPSAGPAEAEAVPAVPGMPERFTAADLAAVPE 582


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,858,774
Number of Sequences: 5004
Number of extensions: 83482
Number of successful extensions: 215
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 206
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 215
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 460503700
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)