Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP21_F_J06
         (908 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.     23   3.8  
DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               23   5.1  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              22   6.7  

>EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.
          Length = 570

 Score = 23.0 bits (47), Expect = 3.8
 Identities = 18/63 (28%), Positives = 25/63 (39%), Gaps = 6/63 (9%)
 Frame = -1

Query: 443 SFFRMSHNAIFAQVHVEHDFIA------GQYGNDHVDSINGCSNGVGWRHSVLGRCVQCI 282
           +F RM  N I  Q+  + +  A      GQ G   +D+I       GW H +    V C 
Sbjct: 322 NFDRMQGNPICVQIPWDKNVEALAKWANGQTGFPWIDAIMTQLREEGWIHHLARHAVACF 381

Query: 281 FGR 273
             R
Sbjct: 382 LTR 384


>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 22.6 bits (46), Expect = 5.1
 Identities = 9/20 (45%), Positives = 14/20 (70%)
 Frame = +2

Query: 155 RRAYSSNTDKNVAFLGPRKH 214
           R ++S NTD ++A L  +KH
Sbjct: 121 RASFSLNTDGDIAGLRKKKH 140


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 22.2 bits (45), Expect = 6.7
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = -1

Query: 599  TTSGHEGQGSVLSTHDS 549
            T SGH G G +L+ +D+
Sbjct: 1927 TGSGHGGHGGLLTPYDT 1943


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 263,923
Number of Sequences: 438
Number of extensions: 6137
Number of successful extensions: 6
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 29509116
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)