Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP21_F_I23
         (930 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1442.08c |cox12||cytochrome c oxidase subunit VIb|Schizosacc...    60   6e-10
SPAC328.04 |||AAA family ATPase, unknown biological role|Schizos...    27   2.8  
SPBC1703.01c ||SPBP4H10.22c|RNase P and RNase MRP subunit|Schizo...    27   3.8  
SPBC1347.08c |||ribonuclease H2 complex subunit|Schizosaccharomy...    26   6.6  

>SPCC1442.08c |cox12||cytochrome c oxidase subunit
           VIb|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 83

 Score = 59.7 bits (138), Expect = 6e-10
 Identities = 23/44 (52%), Positives = 28/44 (63%)
 Frame = +2

Query: 245 CQKVRGEKYEPCYYFKRVYRSLCPNEWVDKWDNQRAEGTFAGRI 376
           C K +GE + PC  F   Y+SLCP EWV++WD QR  GTF   I
Sbjct: 40  CIKAKGEDFVPCKQFWHAYQSLCPMEWVERWDEQRENGTFPAPI 83



 Score = 34.3 bits (75), Expect = 0.025
 Identities = 11/17 (64%), Positives = 15/17 (88%)
 Frame = +1

Query: 193 NQNQTRHCYQSYVDFHR 243
           N NQT+HC+QSY+D+ R
Sbjct: 23  NTNQTKHCFQSYIDYFR 39


>SPAC328.04 |||AAA family ATPase, unknown biological
           role|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 741

 Score = 27.5 bits (58), Expect = 2.8
 Identities = 16/66 (24%), Positives = 33/66 (50%), Gaps = 1/66 (1%)
 Frame = +3

Query: 171 LSTHGFP*PKSDEALLP-KLRGLPPFARKFAAKNTSHATISRECTGLSAPMSGSTSGTTS 347
           +S+   P  K  ++ LP +   +P  +++ +  +TS AT++     +S+     +    S
Sbjct: 285 ISSSSSPFKKKTQSHLPNRTTEVPSISKQLSKSSTSIATVAPSLASVSSVTKSPSPTPQS 344

Query: 348 APKAPS 365
           AP+A S
Sbjct: 345 APRAQS 350


>SPBC1703.01c ||SPBP4H10.22c|RNase P and RNase MRP
           subunit|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 217

 Score = 27.1 bits (57), Expect = 3.8
 Identities = 9/19 (47%), Positives = 15/19 (78%)
 Frame = -1

Query: 57  TNENQILRIPYSESVMKTV 1
           T EN+++R+P  +SVMK +
Sbjct: 162 TKENRVVRVPKQDSVMKVI 180


>SPBC1347.08c |||ribonuclease H2 complex subunit|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 293

 Score = 26.2 bits (55), Expect = 6.6
 Identities = 17/69 (24%), Positives = 30/69 (43%)
 Frame = +2

Query: 86  IEINPRNG*IIISNMPEMIKSPADLKTAPFDPRXPXTKIRRGTATKVTWTSTVCQKVRGE 265
           ++I  R   +   N+P  I +    + AP D R P  +     + K    S VC+ ++ E
Sbjct: 152 VKILLRKAKVAQENLPPSIVTELKKQLAPLDLRTPLPQDLLELSCKWHAASLVCEDLQPE 211

Query: 266 KYEPCYYFK 292
            Y    Y++
Sbjct: 212 WYNKLAYWQ 220


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,184,568
Number of Sequences: 5004
Number of extensions: 59489
Number of successful extensions: 149
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 141
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 149
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 471335896
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)