Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP21_F_I19
         (915 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB1A10.08 |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    27   4.9  
SPAC8C9.16c |mug63||TLDc domain protein 1|Schizosaccharomyces po...    26   6.5  
SPAC821.08c |slp1||sleepy homolog Slp1|Schizosaccharomyces pombe...    26   8.6  

>SPAPB1A10.08 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 412

 Score = 26.6 bits (56), Expect = 4.9
 Identities = 26/86 (30%), Positives = 39/86 (45%)
 Frame = +3

Query: 507 QSRPGLQHRGQQGLLHKHESLRKFHDDVQGRIPSQEFGILDLLRKNEGRSHRAVQAVLLC 686
           +SR  LQH+     L ++   R FH       PS    IL+L   + G S+  +   LLC
Sbjct: 267 KSRASLQHKIMS--LSRNIIRRVFHKPEVHLDPSAS--ILNL-SSSHGESN--LTNGLLC 319

Query: 687 QRF*MFLQNXMLRXSXHEPGNVLYTP 764
           Q F +F  + ++     +    LYTP
Sbjct: 320 QNFKLFQDDWLMEDCAPDANFTLYTP 345


>SPAC8C9.16c |mug63||TLDc domain protein 1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 188

 Score = 26.2 bits (55), Expect = 6.5
 Identities = 11/21 (52%), Positives = 13/21 (61%)
 Frame = -2

Query: 161 FFSSSRSFLQKPRPPKKPPHY 99
           +F S  +FL K  PPKK  HY
Sbjct: 97  YFGSEETFLWKYFPPKKYVHY 117


>SPAC821.08c |slp1||sleepy homolog Slp1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 488

 Score = 25.8 bits (54), Expect = 8.6
 Identities = 17/62 (27%), Positives = 31/62 (50%), Gaps = 1/62 (1%)
 Frame = -1

Query: 609 GKESDLVHHHEIFVGFHVCVAVLAGLDVEVLGDFVVLSFIADLVNVVE-KRQNLLLLFDE 433
           G  S  +HHH++ +  H  +  L G   EV G    L++ +D + +      N++ ++D 
Sbjct: 279 GSRSGAIHHHDVRIANHQ-IGTLQGHSSEVCG----LAWRSDGLQLASGGNDNVVQIWDA 333

Query: 432 RS 427
           RS
Sbjct: 334 RS 335


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,203,485
Number of Sequences: 5004
Number of extensions: 60537
Number of successful extensions: 162
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 157
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 162
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 464508080
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)