Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP21_F_I11
(934 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_03_0867 + 25534760-25539620,25540662-25540857,25540957-255411... 31 1.7
01_01_1008 - 7987936-7988628,7988923-7989102 31 1.7
10_02_0167 - 6100676-6102111,6102174-6102708,6102967-6103975,610... 30 2.3
06_03_0833 - 25196091-25196372,25196464-25196565,25196640-251968... 29 4.0
06_03_1508 - 30653967-30654245,30654342-30654631,30654773-306548... 29 7.0
03_02_0916 + 12364557-12364906,12365485-12365592,12365731-12366343 29 7.0
01_05_0463 + 22461169-22461216,22463153-22463248,22463334-224634... 29 7.0
01_01_1201 + 9678893-9679311,9679415-9679721 29 7.0
10_08_0940 - 21708557-21708733,21709058-21709142,21709330-217095... 28 9.2
09_04_0741 - 19852339-19852497,19853185-19853246,19853352-198534... 28 9.2
>06_03_0867 +
25534760-25539620,25540662-25540857,25540957-25541104,
25541673-25541751,25542151-25542238,25542330-25542600,
25542676-25542718,25542801-25542904,25543374-25543790
Length = 2068
Score = 30.7 bits (66), Expect = 1.7
Identities = 15/46 (32%), Positives = 21/46 (45%), Gaps = 2/46 (4%)
Frame = +2
Query: 755 GVXRSLQAGLCARTPRSTRPLRLIRYYRLESNPV--XPTYPPWQQP 886
G AG R P+ P R+ ++R+E NP P+ PP P
Sbjct: 274 GSPHGTSAGYARRAPQKVAPSRVSVWHRIEENPAMYEPSSPPPHMP 319
>01_01_1008 - 7987936-7988628,7988923-7989102
Length = 290
Score = 30.7 bits (66), Expect = 1.7
Identities = 13/36 (36%), Positives = 20/36 (55%)
Frame = -3
Query: 725 RKRHASRREKGGQVSGKRQGSEQESARGSFQGETPG 618
R R RR GG+V+G+ + RG+++GE G
Sbjct: 239 RVRRRGRRGGGGEVNGEEAARSRRRRRGAWEGEEEG 274
>10_02_0167 -
6100676-6102111,6102174-6102708,6102967-6103975,
6104006-6105036
Length = 1336
Score = 30.3 bits (65), Expect = 2.3
Identities = 18/43 (41%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
Frame = -1
Query: 739 QREL*ESATLPEGRKAD-RYPVSGRXRNRRAHEGASRGKRLVS 614
QREL AT P D R ++GR + RR + A+R +R VS
Sbjct: 32 QRELPRQATPPPRGTGDLRDQINGRRKARRTRDDANRSRRHVS 74
>06_03_0833 -
25196091-25196372,25196464-25196565,25196640-25196838,
25196978-25197278,25197471-25197645,25197842-25198012,
25198207-25198239
Length = 420
Score = 29.5 bits (63), Expect = 4.0
Identities = 20/61 (32%), Positives = 25/61 (40%), Gaps = 2/61 (3%)
Frame = +3
Query: 522 CWRFSIGSAPLTSITKIDAQVRGGETRQDYKDTRRFPLEAPSCALLFRXL--PLTGYLSA 695
CWR + T D Q + +KD P + PSC L+F L PL L A
Sbjct: 283 CWRHFLNQDFAMFATAGDDQWNPEDHLPSFKDDSLIPYDVPSCHLIFIPLLQPLHYSLYA 342
Query: 696 F 698
F
Sbjct: 343 F 343
>06_03_1508 -
30653967-30654245,30654342-30654631,30654773-30654841,
30654854-30654921,30655016-30655492,30655578-30655874,
30655974-30656824,30656917-30656990,30657270-30657292,
30657709-30657772,30658098-30658370,30658511-30658587,
30658686-30658912
Length = 1022
Score = 28.7 bits (61), Expect = 7.0
Identities = 16/50 (32%), Positives = 23/50 (46%), Gaps = 1/50 (2%)
Frame = +1
Query: 565 QKSTLKSEVAKPDRTIKIPGV-SPWKLPRALSCSXPCRLPDTCPPFSLRE 711
Q L+ V P RT+ G + + P L+C PC L CP +L +
Sbjct: 158 QNINLQDAVNFPSRTLDCRGCCAGFFCPHGLTCMIPCPLGAYCPESTLNK 207
>03_02_0916 + 12364557-12364906,12365485-12365592,12365731-12366343
Length = 356
Score = 28.7 bits (61), Expect = 7.0
Identities = 22/56 (39%), Positives = 25/56 (44%), Gaps = 4/56 (7%)
Frame = +3
Query: 354 PLPRSLTRCARSF--GCGERYQLTQRR*YGYPQNQGITQ--ERTCEQKASKRPGTV 509
P PRS RC GCG R Q TQR P N IT E TC ++ P +
Sbjct: 150 PYPRSYYRCTHKLDQGCGARRQ-TQRC-EADPSNYDITYYGEHTCRDPSTIIPTAI 203
>01_05_0463 +
22461169-22461216,22463153-22463248,22463334-22463446,
22463479-22463494,22463939-22464031,22464118-22464261,
22464508-22464596,22464687-22464792,22464874-22464961,
22465585-22465703,22465788-22465952,22466235-22466404,
22466488-22466597,22466682-22466791,22466886-22466996,
22467082-22467183,22467266-22467471,22467563-22467881,
22467983-22468093
Length = 771
Score = 28.7 bits (61), Expect = 7.0
Identities = 12/34 (35%), Positives = 18/34 (52%)
Frame = +2
Query: 824 IRYYRLESNPVXPTYPPWQQPLVPDYQTEVFXXA 925
+ Y R+ N + PPW ++PD +T VF A
Sbjct: 325 VSYARVAFNGMHYDLPPWSISILPDCKTTVFNTA 358
>01_01_1201 + 9678893-9679311,9679415-9679721
Length = 241
Score = 28.7 bits (61), Expect = 7.0
Identities = 19/58 (32%), Positives = 29/58 (50%), Gaps = 3/58 (5%)
Frame = -3
Query: 782 AQLGANDXHRTEIXTA*AMRKRHASRREKGGQVSGKRQGSEQESAR---GSFQGETPG 618
A + + R E A + HA+RR++ G G G+ QESAR G+ + + PG
Sbjct: 2 ASMQKSREERAEAAAHRAADELHAARRDEPGGGGGGMLGTVQESARSLLGAVRDKIPG 59
>10_08_0940 -
21708557-21708733,21709058-21709142,21709330-21709551,
21710640-21710815,21711883-21711946,21712433-21712507,
21715114-21715199,21715297-21716715
Length = 767
Score = 28.3 bits (60), Expect = 9.2
Identities = 15/31 (48%), Positives = 20/31 (64%), Gaps = 3/31 (9%)
Frame = +3
Query: 303 NESAN---ARGEAVCVLGALPLPRSLTRCAR 386
+ESAN AR EAV +G +P+ L RC+R
Sbjct: 434 DESANVDAARSEAVMRVGGIPMLLDLARCSR 464
>09_04_0741 -
19852339-19852497,19853185-19853246,19853352-19853415,
19853561-19853614,19853744-19853890,19854460-19854564,
19854651-19854794,19854987-19855093,19855613-19855712,
19855804-19855833,19856492-19856608,19856705-19856828,
19857143-19857189,19857272-19857400,19857777-19857852,
19858446-19858543,19858630-19858671,19858811-19859044
Length = 612
Score = 28.3 bits (60), Expect = 9.2
Identities = 11/31 (35%), Positives = 16/31 (51%)
Frame = +1
Query: 646 RALSCSXPCRLPDTCPPFSLREAWRFLIAHA 738
R L+C C P CPP+S W+ ++ A
Sbjct: 466 RELNCKSICHSP-MCPPYSAMTEWQHMVLSA 495
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,409,774
Number of Sequences: 37544
Number of extensions: 540351
Number of successful extensions: 1667
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1586
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1666
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2670960720
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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