Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP21_F_I09
         (927 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC19A8.05c |vps27|sst4|sorting receptor for ubiquitinated memb...    69   9e-13
SPBC1734.08 |hse1||STAM like protein Hse1|Schizosaccharomyces po...    56   9e-09
SPAC1F3.05 |||adaptin |Schizosaccharomyces pombe|chr 1|||Manual        50   4e-07
SPBC31F10.07 |||cortical component Lsb5 |Schizosaccharomyces pom...    46   6e-06
SPBC25H2.16c |||adaptin|Schizosaccharomyces pombe|chr 2|||Manual       44   2e-05
SPAC630.07c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    27   3.8  
SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase Mok11|S...    26   8.7  
SPACUNK4.12c |mug138||metallopeptidase|Schizosaccharomyces pombe...    26   8.7  
SPAC4D7.08c |ade4|min13, aza1|amidophosphoribosyltransferase |Sc...    26   8.7  

>SPAC19A8.05c |vps27|sst4|sorting receptor for ubiquitinated
           membrane proteins, ESCRT 0 complex|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 610

 Score = 68.9 bits (161), Expect = 9e-13
 Identities = 37/89 (41%), Positives = 53/89 (59%), Gaps = 2/89 (2%)
 Frame = +3

Query: 396 FGTSSPFDQDVERATSENNT--SEEWGLIMEICDRAGASSTSAKECLRAVMRRLAHPDPH 569
           + ++S F  D+E+ATSE     SEE  L +EI D+  + S   K  +R +  R+ H +P+
Sbjct: 5   WNSNSQFASDIEKATSETLPAGSEEISLYLEISDQIRSKSVDPKFAMRILKSRIDHSNPN 64

Query: 570 VQVHAATLLDACVANCGRFFHLEVASRDF 656
           VQ+ A  L D CV N G  F LE+ASR+F
Sbjct: 65  VQIMALKLTDTCVKNGGSGFLLEIASREF 93


>SPBC1734.08 |hse1||STAM like protein Hse1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 373

 Score = 55.6 bits (128), Expect = 9e-09
 Identities = 28/87 (32%), Positives = 49/87 (56%), Gaps = 1/87 (1%)
 Frame = +3

Query: 399 GTSSPFDQDVERATSENNTSEEWGLIMEICDRAGASSTS-AKECLRAVMRRLAHPDPHVQ 575
           G  +  +  + +AT E NT E+W +IM+ CD+  ++S    +  ++ + +RL   + ++Q
Sbjct: 4   GKPNSIETLILQATDEKNTKEKWDVIMDACDQLSSTSGDVGRNSIKFLNKRLDTANANIQ 63

Query: 576 VHAATLLDACVANCGRFFHLEVASRDF 656
           + A TL DA V NC      E++SR F
Sbjct: 64  LLALTLTDAIVKNCKTSIVREISSRTF 90


>SPAC1F3.05 |||adaptin |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 510

 Score = 50.4 bits (115), Expect = 4e-07
 Identities = 26/86 (30%), Positives = 43/86 (50%), Gaps = 1/86 (1%)
 Frame = +3

Query: 402 TSSPFDQDVERATSENNTSEEWGLIMEICDRAGASS-TSAKECLRAVMRRLAHPDPHVQV 578
           +S    + +++AT + N      L +EI D        + +E    +++R+   +P V  
Sbjct: 3   SSQTLSKYIDKATDQFNLEPNLALNIEIADLINEKKGNTPREAALLILKRVNSANPTVSY 62

Query: 579 HAATLLDACVANCGRFFHLEVASRDF 656
            A  LLD CV NCG  FH ++AS +F
Sbjct: 63  LALHLLDICVKNCGYPFHFQIASEEF 88


>SPBC31F10.07 |||cortical component Lsb5 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 304

 Score = 46.4 bits (105), Expect = 6e-06
 Identities = 24/84 (28%), Positives = 41/84 (48%), Gaps = 3/84 (3%)
 Frame = +3

Query: 387 MGIFGTSSPFDQD---VERATSENNTSEEWGLIMEICDRAGASSTSAKECLRAVMRRLAH 557
           MGIF  + P       ++R TS +   E+   I+++ +    + T  +E  R + ++L +
Sbjct: 1   MGIFSETVPITAVTTYIDRLTSRDTDDEDLSGIVQLSEAVNLTVTGPREASRTLRKKLKY 60

Query: 558 PDPHVQVHAATLLDACVANCGRFF 629
             PH QV A  +L A + N G  F
Sbjct: 61  STPHEQVRALVILQALIENAGSHF 84


>SPBC25H2.16c |||adaptin|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 533

 Score = 44.4 bits (100), Expect = 2e-05
 Identities = 24/81 (29%), Positives = 42/81 (51%), Gaps = 1/81 (1%)
 Frame = +3

Query: 426 VERATSENNTSEEWGLIMEICDRAGASSTSA-KECLRAVMRRLAHPDPHVQVHAATLLDA 602
           ++ AT       +  + ++I D    +  +  +E   A++R++   +P V   A  LLD 
Sbjct: 12  IQNATEPYAFEPDLAVNLDIADLINQTGGNLPREAAFAIVRKVNDRNPTVAYLALNLLDI 71

Query: 603 CVANCGRFFHLEVASRDFEXE 665
           CV NCG  F L++AS++F  E
Sbjct: 72  CVKNCGYAFRLQIASKEFLNE 92


>SPAC630.07c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 430

 Score = 27.1 bits (57), Expect = 3.8
 Identities = 19/52 (36%), Positives = 26/52 (50%), Gaps = 8/52 (15%)
 Frame = +2

Query: 521 GVSPCRHAALGASRPTRTGSRRHTARRLR----C----KLWSFLPPGSRLAR 652
           GVS C++AA GAS P    +    A++L     C    KLW+  P  S L +
Sbjct: 234 GVSHCKYAAAGASYPLPIPASGLLAQKLAIGLLCKDIIKLWNLCPESSILTK 285


>SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase
            Mok11|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2397

 Score = 25.8 bits (54), Expect = 8.7
 Identities = 20/62 (32%), Positives = 26/62 (41%)
 Frame = +3

Query: 480  EICDRAGASSTSAKECLRAVMRRLAHPDPHVQVHAATLLDACVANCGRFFHLEVASRDFE 659
            E C +A  SS S +  LRA+      P         + LD  V NC +F H +    DF 
Sbjct: 1573 EACRQALTSSKSVRTKLRAISTIQRFPVSEW----VSKLDTHVRNCIKFSHKQNLEEDFI 1628

Query: 660  XE 665
             E
Sbjct: 1629 HE 1630


>SPACUNK4.12c |mug138||metallopeptidase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 969

 Score = 25.8 bits (54), Expect = 8.7
 Identities = 13/37 (35%), Positives = 23/37 (62%)
 Frame = -3

Query: 445 SLVARSTS*SKGEEVPNIPILLTKKHLLDYMLLIKIL 335
           SL+A + S ++  ++  +   LT++ L DY  +IKIL
Sbjct: 318 SLIAFNVSITEDADIIVVSTFLTEEGLTDYQRVIKIL 354


>SPAC4D7.08c |ade4|min13, aza1|amidophosphoribosyltransferase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 533

 Score = 25.8 bits (54), Expect = 8.7
 Identities = 15/33 (45%), Positives = 19/33 (57%)
 Frame = -3

Query: 535 ARRHSFALVEDAPARSHISMISPHSSLVLFSLV 437
           AR+HSFA  E+  A   IS+ + HS  V F  V
Sbjct: 502 ARKHSFAEDEEREAPEDISLHNTHSD-VTFDFV 533


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,950,610
Number of Sequences: 5004
Number of extensions: 55680
Number of successful extensions: 151
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 146
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 150
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 469338710
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)