Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP21_F_I08
         (908 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U32305-14|AAK18857.1|  140|Caenorhabditis elegans Ribosomal prot...   166   2e-41

>U32305-14|AAK18857.1|  140|Caenorhabditis elegans Ribosomal
           protein, large subunitprotein 23 protein.
          Length = 140

 Score =  166 bits (404), Expect = 2e-41
 Identities = 83/117 (70%), Positives = 93/117 (79%)
 Frame = +2

Query: 125 ISLGSPXWEQ*STAPTTQGQRICM*SLSKXIKGRLNRLPAAGSGDMIVATVKKGKPELRK 304
           ISLG P     + A  T  + + + S+   I+GRLNRLP+AG GDM V +VKKGKPELRK
Sbjct: 16  ISLGLPVGAVMNCADNTGAKNLFVISVY-GIRGRLNRLPSAGVGDMFVCSVKKGKPELRK 74

Query: 305 KVMPAVVIRQRKPFRRRDGVFIYFEDNAGVIVNNKGEMKGSAITGPVAKECADLWPR 475
           KV+  VVIRQRK FRR+DG FIYFEDNAGVIVNNKGEMKGSAITGPVAKECADLWPR
Sbjct: 75  KVLQGVVIRQRKQFRRKDGTFIYFEDNAGVIVNNKGEMKGSAITGPVAKECADLWPR 131


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,089,151
Number of Sequences: 27780
Number of extensions: 365310
Number of successful extensions: 682
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 665
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 681
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2318293978
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)