Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP21_F_H21
         (913 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1805.11c |rps2602|rps26-2|40S ribosomal protein S26|Schizosa...   125   1e-29
SPAC806.03c |rps2601|rps26-1, rps26|40S ribosomal protein S26|Sc...   121   1e-28
SPCC126.15c |sec65||signal recognition particle subunit Sec65 |S...    29   1.2  
SPCC553.04 |cyp9||WD repeat containing cyclophilin family peptid...    28   1.6  

>SPAC1805.11c |rps2602|rps26-2|40S ribosomal protein
           S26|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 119

 Score =  125 bits (301), Expect = 1e-29
 Identities = 60/100 (60%), Positives = 77/100 (77%), Gaps = 3/100 (3%)
 Frame = +2

Query: 152 VKAVXCTNCARCVPKDKAIKKFVIRNIVEAAAVRDINDASVYPMFQLPKLYAKLHYCVSC 331
           VK V C NC+R VPKDKAIK++ IRN+VE AA+RD+++ASVY  + +PKLY KL YCVSC
Sbjct: 18  VKFVRCINCSRAVPKDKAIKRWTIRNMVETAAIRDLSEASVYSEYTIPKLYIKLQYCVSC 77

Query: 332 AIHSKVVRNRSKKDRRIRT-PPKSNFPRDMSR--PQAVQR 442
           AIHS+VVR RS++ RRIRT PP+  + RD  +  P AV +
Sbjct: 78  AIHSRVVRVRSREGRRIRTPPPRVRYNRDGKKVNPTAVAK 117


>SPAC806.03c |rps2601|rps26-1, rps26|40S ribosomal protein
           S26|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 120

 Score =  121 bits (292), Expect = 1e-28
 Identities = 57/99 (57%), Positives = 76/99 (76%), Gaps = 3/99 (3%)
 Frame = +2

Query: 155 KAVXCTNCARCVPKDKAIKKFVIRNIVEAAAVRDINDASVYPMFQLPKLYAKLHYCVSCA 334
           K V C NC+R VPKDKAIK++ IRN+VE AA+RD+++ASVY  + +PK+Y KL YCVSCA
Sbjct: 19  KFVRCINCSRAVPKDKAIKRWNIRNMVETAAIRDLSEASVYSEYAIPKIYVKLQYCVSCA 78

Query: 335 IHSKVVRNRSKKDRRIRT-PPKSNFPRDMSR--PQAVQR 442
           IH++VVR RS++ RRIRT PP+  + RD  R  P A+ +
Sbjct: 79  IHARVVRVRSREGRRIRTPPPRVRYNRDGKRVNPAAIAK 117


>SPCC126.15c |sec65||signal recognition particle subunit Sec65
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 199

 Score = 28.7 bits (61), Expect = 1.2
 Identities = 15/26 (57%), Positives = 18/26 (69%)
 Frame = +2

Query: 182 RCVPKDKAIKKFVIRNIVEAAAVRDI 259
           RCVPKDKAI   + +NI  A  VRD+
Sbjct: 20  RCVPKDKAILNPLAKNI--ADVVRDL 43


>SPCC553.04 |cyp9||WD repeat containing cyclophilin family
           peptidyl-prolyl cis-trans isomerase
           Cyp9|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 610

 Score = 28.3 bits (60), Expect = 1.6
 Identities = 12/40 (30%), Positives = 25/40 (62%)
 Frame = -1

Query: 241 RFYDVPNHELFDSLVLWHAPRAVCAXHSFNVTTSMLGASS 122
           + +DV + +L + + L   P+A+C  +S ++ TS++  SS
Sbjct: 115 KVFDVESIDLVNIIDLEFLPKAICCFNSPSLKTSLIAVSS 154


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,434,030
Number of Sequences: 5004
Number of extensions: 38563
Number of successful extensions: 87
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 84
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 87
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 462505890
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)