Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP21_F_H19
(896 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_04_0619 + 26652923-26653267,26653440-26654273 47 2e-05
01_01_1152 + 9170628-9171899 39 0.006
11_01_0767 + 6438648-6438809,6439146-6440000 33 0.31
02_04_0572 + 23972319-23973683 32 0.54
11_01_0532 + 4201374-4201401,4201475-4202652,4204316-4204670,420... 31 1.6
03_05_0294 + 22855503-22855946,22856346-22856399 30 2.9
01_06_0893 - 32766994-32768841,32769596-32769782,32769860-327699... 29 3.8
08_01_1061 - 10804269-10804352,10804464-10804593,10804696-108047... 29 5.0
03_06_0135 + 31928838-31929698,31929783-31929932,31930795-319310... 29 5.0
02_03_0010 - 13914705-13915318,13915536-13915860,13915907-13916077 28 8.8
>04_04_0619 + 26652923-26653267,26653440-26654273
Length = 392
Score = 47.2 bits (107), Expect = 2e-05
Identities = 39/146 (26%), Positives = 68/146 (46%), Gaps = 4/146 (2%)
Frame = +1
Query: 223 VISPFGIWTLMTGIALGASGNSYRQLSRAFILPKNPATLIEGYKSLTDVVLDQTANGVSL 402
+ SP G+ + +A G G + RQL AF+ ++ I + + +L + L
Sbjct: 23 MFSPLGLRAGLALLATGTDGETLRQLL-AFLGSQH----IHQLNAASAGLLAEMRAWPQL 77
Query: 403 VSRNFVFLDNDFTLLPAFRTTLQKDFGASIKVLDFSDPNSARIA--NTYI-EKSGGRVSN 573
+F+D L P F++T GA + +DF + +A A N +I + + GR++N
Sbjct: 78 SFAAGIFVDRSLRLRPEFQSTAAAAHGAFPRSVDFQNQANAAAAEVNRFISQATNGRLNN 137
Query: 574 VLRSDDFQES-RLILTNVISFKGLWG 648
+ F S + +L N + FK WG
Sbjct: 138 TISPGTFGSSTKCVLANAMHFKATWG 163
>01_01_1152 + 9170628-9171899
Length = 423
Score = 38.7 bits (86), Expect = 0.006
Identities = 35/147 (23%), Positives = 65/147 (44%), Gaps = 4/147 (2%)
Frame = +1
Query: 223 VISPFGIWTLMTGIALGASGNSYRQLSRAFILPKNPATLIEGYKSLTDVVLDQTANGVSL 402
++SP + +A GA G + R+L P +L E ++S T ++ + + +
Sbjct: 62 IVSPLSFHAALALVADGARGETQRELLGFLGSP----SLAELHRSPTTRLVARLRHLPNT 117
Query: 403 VSRNFVFLDNDFTLLPAFRTTLQKDFGASIKVLDFS-DPNSARI-ANTYI-EKSGGRVSN 573
V++D L P F + A + DF+ P AR N ++ + + G + +
Sbjct: 118 SFACGVWVDRGRALTPEFADAAASRYAAVAEPADFATQPEQARERVNAFVSDATEGLIRD 177
Query: 574 VLRSDDFQESRLI-LTNVISFKGLWGI 651
VL + S ++ L N + FKG W +
Sbjct: 178 VLPPNSVDSSTVVVLANAVHFKGTWSL 204
>11_01_0767 + 6438648-6438809,6439146-6440000
Length = 338
Score = 33.1 bits (72), Expect = 0.31
Identities = 26/98 (26%), Positives = 49/98 (50%), Gaps = 5/98 (5%)
Frame = +1
Query: 367 VVLDQTANGVSLVSRNF-VFLDNDFTLLPAFRTTLQKDFGASIKVLDFSD-PNSAR-IAN 537
V+ DQ G VS +LD ++L PA+R + + + +DF + P AR N
Sbjct: 4 VLADQAPTGGPCVSFACGSWLDASYSLKPAYRDAIVGTYKGAASTVDFKNHPVEARKEIN 63
Query: 538 TYIEK-SGGRVSNVLRSDDFQ-ESRLILTNVISFKGLW 645
++ + + ++ V++ + ++R ++ N I FKG W
Sbjct: 64 AWVARATKNLITEVIKPESQSVDTRHVVGNAIYFKGEW 101
>02_04_0572 + 23972319-23973683
Length = 454
Score = 32.3 bits (70), Expect = 0.54
Identities = 15/33 (45%), Positives = 19/33 (57%), Gaps = 4/33 (12%)
Frame = +2
Query: 407 AGTLSSWTTISPYCR----PSGRRSRRISVLRL 493
AG LSSW +P+CR GRR R++ L L
Sbjct: 47 AGVLSSWNKTTPFCRWNGVKCGRREHRVTALEL 79
>11_01_0532 +
4201374-4201401,4201475-4202652,4204316-4204670,
4204791-4204864,4206965-4207056,4207500-4207573,
4207680-4207822,4207889-4207909
Length = 654
Score = 30.7 bits (66), Expect = 1.6
Identities = 13/23 (56%), Positives = 16/23 (69%)
Frame = -3
Query: 267 SDSRHQSPYPKRRDHNVPISLSL 199
SDSR Q P+P RDHN +S S+
Sbjct: 584 SDSRGQGPHPNFRDHNGGVSSSI 606
>03_05_0294 + 22855503-22855946,22856346-22856399
Length = 165
Score = 29.9 bits (64), Expect = 2.9
Identities = 23/101 (22%), Positives = 47/101 (46%), Gaps = 4/101 (3%)
Frame = +1
Query: 217 HVVISPFGIWTLMTGIALGASGNSYRQLSRAFILP-KNPATLIEGY-KSLTDVVLDQT-- 384
+V SP + ++ +A GA G + QL +P + A + + + + +VL +
Sbjct: 45 NVAFSPLSLHVALSLVAAGAGGATRDQLVSLLGVPGRGTAEGLHAFAEQVVQLVLADSSP 104
Query: 385 ANGVSLVSRNFVFLDNDFTLLPAFRTTLQKDFGASIKVLDF 507
A G + + VF+D+ +L+ +F+ + A +DF
Sbjct: 105 AGGPRVAFADGVFIDSSLSLMKSFKDVAVGKYKAETHSVDF 145
>01_06_0893 -
32766994-32768841,32769596-32769782,32769860-32769987,
32770080-32770283,32770373-32770523,32771424-32771533,
32772534-32772903,32773031-32773189,32773719-32773848,
32773921-32773989,32774066-32774154,32774319-32774439,
32775878-32776148
Length = 1278
Score = 29.5 bits (63), Expect = 3.8
Identities = 12/34 (35%), Positives = 17/34 (50%)
Frame = +3
Query: 606 VDTNQRDILQRPLGDCRSTNLTPNWSPSTMXTDW 707
++TN + + + DCRS N SPST W
Sbjct: 48 IETNNQGVSTSSVSDCRSCEHVENGSPSTAPPFW 81
>08_01_1061 -
10804269-10804352,10804464-10804593,10804696-10804745,
10805154-10805216,10806235-10806375,10806541-10806925,
10807735-10808339
Length = 485
Score = 29.1 bits (62), Expect = 5.0
Identities = 17/53 (32%), Positives = 30/53 (56%), Gaps = 1/53 (1%)
Frame = -1
Query: 494 LIEAPKSFWSVVLKAGNKVKSLSKKTKFRL-TRDTPFAV*SSTTSVRDLYPSI 339
++E S SV + G+ +K + ++TKFRL + D P+ S SV +P++
Sbjct: 319 VVEVGVSTSSVPITYGSAIKLMHERTKFRLHSHDVPYGSGSGQQSVTS-FPNV 370
>03_06_0135 +
31928838-31929698,31929783-31929932,31930795-31931065,
31931157-31931249,31931442-31931616,31931715-31931960,
31932100-31932294,31932604-31932802
Length = 729
Score = 29.1 bits (62), Expect = 5.0
Identities = 15/34 (44%), Positives = 19/34 (55%)
Frame = +3
Query: 324 KSGNAYRRVQIPDGRGARSDRERSIPGQPELCLL 425
KSG+ Y DG G++ RERS P P CL+
Sbjct: 236 KSGHHYIPCVDFDGDGSQRHRERSCPRLPATCLV 269
>02_03_0010 - 13914705-13915318,13915536-13915860,13915907-13916077
Length = 369
Score = 28.3 bits (60), Expect = 8.8
Identities = 17/45 (37%), Positives = 25/45 (55%), Gaps = 7/45 (15%)
Frame = +3
Query: 300 EQSVYFAQKSGNAYR----RVQI---PDGRGARSDRERSIPGQPE 413
E+++Y K+ N YR RV+ P +G ++ R IPGQPE
Sbjct: 135 EEAIYMGNKNNNGYRLSGGRVRNQPRPYYQGVPANEFRRIPGQPE 179
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,705,213
Number of Sequences: 37544
Number of extensions: 440487
Number of successful extensions: 1056
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1030
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1055
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2530383840
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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