Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP21_F_H12
         (941 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein homolog|Schi...    30   0.41 
SPBC23E6.09 |ssn6||transcriptional corepressor Ssn6|Schizosaccha...    30   0.54 
SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomy...    28   1.7  
SPCC320.04c |||GTPase Gem1 |Schizosaccharomyces pombe|chr 3|||Ma...    27   2.9  
SPAC1F7.06 |||ThiJ domain protein|Schizosaccharomyces pombe|chr ...    27   3.8  
SPBC3B8.10c |||NLI interacting factor family|Schizosaccharomyces...    27   3.8  
SPAC959.05c |||protein disulfide isomerase |Schizosaccharomyces ...    26   6.7  
SPAC18G6.10 |||chromosome segregation protein |Schizosaccharomyc...    26   6.7  
SPAC1952.17c ||SPAC890.01c|GTPase activating protein|Schizosacch...    26   8.8  

>SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein
           homolog|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 3071

 Score = 30.3 bits (65), Expect = 0.41
 Identities = 20/66 (30%), Positives = 32/66 (48%), Gaps = 1/66 (1%)
 Frame = -2

Query: 214 VTGGSSETSAKQTPATNSNAQNL-ITAEAIASKIHKQKKYNIGKMMSMRSQQTYKTQNLK 38
           +T G   T   + P +N   ++L I  E I   IH Q K ++ +    +SQQ  K + L 
Sbjct: 56  ITSGLIGTFTLEIPWSNLRNKSLTINIEDIYLSIHPQAKNSLTRDELEQSQQALKQEQLD 115

Query: 37  EFPIVK 20
            F I++
Sbjct: 116 SFEILR 121


>SPBC23E6.09 |ssn6||transcriptional corepressor
           Ssn6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1102

 Score = 29.9 bits (64), Expect = 0.54
 Identities = 15/44 (34%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
 Frame = -2

Query: 280 PSHC-RPCLHPEIAWQMQPRHTSVTGGSSETSAKQTPATNSNAQ 152
           PSH  R  LHP ++ Q QP   S + G ++ + +Q P+ +  +Q
Sbjct: 54  PSHLPRSTLHPLLSQQQQPAQQSPSLGPAQQNIQQPPSVSIASQ 97


>SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 709

 Score = 28.3 bits (60), Expect = 1.7
 Identities = 12/24 (50%), Positives = 17/24 (70%)
 Frame = +2

Query: 38  LKILSLVCLLRAHRHHFSNIIFFL 109
           L+++SLV LLR+H   +  II FL
Sbjct: 396 LRLVSLVALLRSHVRSYKKIIIFL 419


>SPCC320.04c |||GTPase Gem1 |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 630

 Score = 27.5 bits (58), Expect = 2.9
 Identities = 11/40 (27%), Positives = 20/40 (50%)
 Frame = +2

Query: 38  LKILSLVCLLRAHRHHFSNIIFFLFVYFRRNGFGCDQVLC 157
           +K  +++CL+ +  + +  +  F   YFR  G     VLC
Sbjct: 72  IKKANVICLVYSDNYSYERVSIFWLPYFRSLGVNVPIVLC 111


>SPAC1F7.06 |||ThiJ domain protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 251

 Score = 27.1 bits (57), Expect = 3.8
 Identities = 9/22 (40%), Positives = 15/22 (68%)
 Frame = +3

Query: 468 VNCYDYMAIHKKGGYGCTGELP 533
           +N  DY+ ++  GGYGC+ + P
Sbjct: 105 LNPSDYVIVYIPGGYGCSFDFP 126


>SPBC3B8.10c |||NLI interacting factor family|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 476

 Score = 27.1 bits (57), Expect = 3.8
 Identities = 16/77 (20%), Positives = 32/77 (41%)
 Frame = -2

Query: 313 PHVMRKRPHVSPSHCRPCLHPEIAWQMQPRHTSVTGGSSETSAKQTPATNSNAQNLITAE 134
           P    +RP    S+  P  H + A+    RH S    SS ++        S A+  I+  
Sbjct: 147 PQPSVRRPRFYSSYSYPSSHQDPAYSSFKRHRSSNSYSSSSNGNHVRFQPSIAEEEISFN 206

Query: 133 AIASKIHKQKKYNIGKM 83
           + ++ ++ ++   +  M
Sbjct: 207 SFSNSLNSEEDVCVSPM 223


>SPAC959.05c |||protein disulfide isomerase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 632

 Score = 26.2 bits (55), Expect = 6.7
 Identities = 10/23 (43%), Positives = 11/23 (47%)
 Frame = -2

Query: 286 VSPSHCRPCLHPEIAWQMQPRHT 218
           VS  HC  C H E  W    R+T
Sbjct: 204 VSLKHCEDCFHWEAVWSSITRNT 226


>SPAC18G6.10 |||chromosome segregation protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 688

 Score = 26.2 bits (55), Expect = 6.7
 Identities = 17/81 (20%), Positives = 33/81 (40%), Gaps = 1/81 (1%)
 Frame = -2

Query: 355 ERPLIVGFPASAQ*PHVMRKRPHVSPSHCRPCLHPEIAWQMQPRHTSVTGGSSETSAK-Q 179
           ++P  +  P   + PHV +     S S   P +   +  +  P H S     S  S +  
Sbjct: 111 DKPSNIETPVKIESPHVSQNNTFQSYSELSPNVETSLTMKTPPAHASTPKFRSHKSHRVA 170

Query: 178 TPATNSNAQNLITAEAIASKI 116
            P +  ++  L T+ A + ++
Sbjct: 171 VPMSFMDSSALHTSPAFSERL 191


>SPAC1952.17c ||SPAC890.01c|GTPase activating
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 619

 Score = 25.8 bits (54), Expect = 8.8
 Identities = 12/28 (42%), Positives = 18/28 (64%)
 Frame = -2

Query: 202 SSETSAKQTPATNSNAQNLITAEAIASK 119
           SS T+A  TP  + +++  I AEAIA +
Sbjct: 215 SSSTTALSTPRQSMDSKRTINAEAIAGE 242


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,295,423
Number of Sequences: 5004
Number of extensions: 68009
Number of successful extensions: 180
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 164
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 180
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 479324640
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)