Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP21_F_G22
         (908 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP35G2.04c |||sequence orphan|Schizosaccharomyces pombe|chr 2|...    29   0.69 
SPAC12G12.13c |cid14||poly|Schizosaccharomyces pombe|chr 1|||Manual    27   4.9  
SPAC24H6.04 |hxk1||hexokinase 1 |Schizosaccharomyces pombe|chr 1...    26   6.4  
SPCC16C4.19 ||SPCC5E4.08|RNase MRP|Schizosaccharomyces pombe|chr...    26   6.4  
SPCPB1C11.02 |||amino acid permease, unknown 16|Schizosaccharomy...    26   6.4  

>SPBP35G2.04c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 249

 Score = 29.5 bits (63), Expect = 0.69
 Identities = 13/33 (39%), Positives = 22/33 (66%)
 Frame = +1

Query: 154 RAILNSTKIPGVQRVATKSTEKTPVTRDTTYCS 252
           RAIL+S + P  +  A+K+ E  P+T D ++C+
Sbjct: 140 RAILDSIRYPFGKDHASKNMELLPITYDLSFCT 172


>SPAC12G12.13c |cid14||poly|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 684

 Score = 26.6 bits (56), Expect = 4.9
 Identities = 20/67 (29%), Positives = 26/67 (38%)
 Frame = -3

Query: 660 KSGWLAKNTPYMSQISRSYQFAALNTSQAESTGVNSSV*VLTLIRAL*RRESMLYMISNL 481
           K GWL  N PY+  I     F   N     S G+       T         S LY +++ 
Sbjct: 470 KMGWLKPNQPYLLSIQDPVDFQ--NDVSKSSRGLLRV--KATFANGFDLLTSKLYALASR 525

Query: 480 FEREGTS 460
            EREG +
Sbjct: 526 IEREGVN 532


>SPAC24H6.04 |hxk1||hexokinase 1 |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 484

 Score = 26.2 bits (55), Expect = 6.4
 Identities = 9/23 (39%), Positives = 15/23 (65%)
 Frame = +2

Query: 299 YVADCLPKYVQKVQLTAGNELEV 367
           Y+ADC+ K+V++V       LE+
Sbjct: 133 YIADCIKKFVEEVHPGKSQNLEI 155


>SPCC16C4.19 ||SPCC5E4.08|RNase MRP|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 184

 Score = 26.2 bits (55), Expect = 6.4
 Identities = 13/44 (29%), Positives = 21/44 (47%)
 Frame = +1

Query: 247 CSQIRSTPKGAARRLRQICS*LSTQVCAESTADCRQRTRGAHSS 378
           CS +   P G   RL Q    L  +  AES++   +  + AH++
Sbjct: 99  CSYVHEIPLGVPLRLHQSKQALRAKAIAESSSTKLESRKSAHNA 142


>SPCPB1C11.02 |||amino acid permease, unknown 16|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 505

 Score = 26.2 bits (55), Expect = 6.4
 Identities = 12/37 (32%), Positives = 18/37 (48%)
 Frame = -3

Query: 345 VSCTFCTYLGRQSATYLPKSTSCAFWSGSNLATVGRV 235
           V+ +FCTY+GR     L  S +  +W    +A    V
Sbjct: 79  VAGSFCTYVGRYVDEALSFSLTWNYWLNDTIALASHV 115


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,440,076
Number of Sequences: 5004
Number of extensions: 70447
Number of successful extensions: 124
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 121
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 124
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 460503700
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)