Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP21_F_G22
         (908 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_01_0454 - 3234331-3236299,3237254-3238074                           31   1.7  
07_03_0685 - 20679883-20679927,20680034-20680087,20680179-206803...    28   8.9  
06_03_1174 - 28164003-28164350,28164504-28164680,28165147-28166178     28   8.9  
06_01_0408 - 2907333-2907550,2908339-2908761,2908852-2909023,290...    28   8.9  
03_05_0737 + 27258320-27259007,27259263-27259435,27262684-272627...    28   8.9  

>06_01_0454 - 3234331-3236299,3237254-3238074
          Length = 929

 Score = 30.7 bits (66), Expect = 1.7
 Identities = 29/106 (27%), Positives = 49/106 (46%), Gaps = 3/106 (2%)
 Frame = +2

Query: 290 FGKYVADCLPKYVQKVQLTAGNELEVLIP-PDAVIPVLSFLKDHHSAQFANLV-DIAGMD 463
           F K + DC  K   K +L +   L+     P A+I + SFL DH S    N V  I    
Sbjct: 340 FYKRIFDCEEKCPPKFELASEEILKRCDGIPLAIISISSFLADHESLYHWNEVKKIISSP 399

Query: 464 VPSRSNRFEIIYNILSLR-YNARIRVKTYTDELTPVDSACDVFKAA 598
           +P  +   E + ++L+L  YN    +++    L+     C++ K++
Sbjct: 400 LPG-NEYLETMQSVLALSYYNLPHDIRSCLLYLSAFPEDCEIAKSS 444


>07_03_0685 -
           20679883-20679927,20680034-20680087,20680179-20680390,
           20680476-20680550,20683094-20683168,20686196-20686264,
           20686349-20686502,20686577-20686654,20689102-20689194,
           20689491-20689640,20690134-20690268,20691009-20691098,
           20691412-20691453,20691796-20692053,20692131-20692207,
           20693126-20693186,20693687-20693905,20694936-20695208,
           20695314-20695505,20695841-20696011
          Length = 840

 Score = 28.3 bits (60), Expect = 8.9
 Identities = 13/31 (41%), Positives = 18/31 (58%)
 Frame = -3

Query: 258 NLATVGRVSCNGGFFRRFCRYALNTRYFGTV 166
           NL  VG V+ N  FFR+F   + + R  G+V
Sbjct: 438 NLPVVGDVNINAAFFRKFDYKSSSVRLIGSV 468


>06_03_1174 - 28164003-28164350,28164504-28164680,28165147-28166178
          Length = 518

 Score = 28.3 bits (60), Expect = 8.9
 Identities = 16/36 (44%), Positives = 22/36 (61%), Gaps = 2/36 (5%)
 Frame = +2

Query: 308 DCLPKYVQKVQLTA--GNELEVLIPPDAVIPVLSFL 409
           D LP  V  V+  A  G +  V+IP DAV+ ++SFL
Sbjct: 37  DGLPAAVAPVEAAAPVGEDPMVVIPDDAVLRIISFL 72


>06_01_0408 -
           2907333-2907550,2908339-2908761,2908852-2909023,
           2909059-2909400
          Length = 384

 Score = 28.3 bits (60), Expect = 8.9
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = -3

Query: 297 LPKSTSCAFWSGSNLATVGRVSCNGGFFR 211
           L +STS  F  G+N+A  G  + +  FFR
Sbjct: 112 LQRSTSADFKKGANMAITGATAMDANFFR 140


>03_05_0737 +
           27258320-27259007,27259263-27259435,27262684-27262758,
           27262832-27263296
          Length = 466

 Score = 28.3 bits (60), Expect = 8.9
 Identities = 12/28 (42%), Positives = 19/28 (67%)
 Frame = -2

Query: 502 VIYDFESV*ARGYVHASDIDKVSKLSAV 419
           + YD+ +  A   +H SD+DKVS L+A+
Sbjct: 160 ITYDYVTEDAADLLHQSDLDKVSALAAL 187


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,330,066
Number of Sequences: 37544
Number of extensions: 471943
Number of successful extensions: 968
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 944
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 968
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2577242800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)