Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP21_F_G18
         (945 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC694.02 |||DEAD/DEAH box helicase|Schizosaccharomyces pombe|c...    27   2.9  
SPBC359.05 |abc3||ABC transporter Abc3|Schizosaccharomyces pombe...    26   6.7  
SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual    26   8.9  

>SPAC694.02 |||DEAD/DEAH box helicase|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1717

 Score = 27.5 bits (58), Expect = 2.9
 Identities = 11/22 (50%), Positives = 13/22 (59%)
 Frame = +2

Query: 182  QFLGTSQAGPIQRDTFHEACEE 247
            Q +  SQAGP  RDT H   +E
Sbjct: 1338 QLISGSQAGPFARDTIHALMDE 1359


>SPBC359.05 |abc3||ABC transporter Abc3|Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 1465

 Score = 26.2 bits (55), Expect = 6.7
 Identities = 10/27 (37%), Positives = 16/27 (59%)
 Frame = +2

Query: 11   HYXSHYRESLRFKLLDL*LEFPPKAHV 91
            HY + YRE L F L ++ +E  P+  +
Sbjct: 1230 HYSAKYREDLSFALNNINIEISPREKI 1256


>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1236

 Score = 25.8 bits (54), Expect = 8.9
 Identities = 22/92 (23%), Positives = 46/92 (50%), Gaps = 1/92 (1%)
 Frame = +3

Query: 57  ICNSNFLRKRTSPIAMKSLXAPLXCPXCVCVHSYHFLVGDIS-SSLAHHKLVQYNAIPFM 233
           + +S+ L   +SP+A  S  +P+     + V +Y   + +I+ SSL+   +   +AIP  
Sbjct: 678 VSSSSSLIVSSSPVASSS-SSPIPSSSSL-VSTYSASLSNITHSSLSLTAMSSSSAIPTS 735

Query: 234 KRVKNYFYSSADNKIITGIQALDSLNSKATVN 329
                   +S+ N +++ I +  ++ S  TV+
Sbjct: 736 VNSSTLITASSSNTLLSSITSSSAIVSSTTVS 767


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,014,103
Number of Sequences: 5004
Number of extensions: 50699
Number of successful extensions: 125
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 122
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 125
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 481321826
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)