Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP21_F_G14
         (922 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    25   0.97 
AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    23   5.2  
AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.     23   5.2  

>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 25.0 bits (52), Expect = 0.97
 Identities = 11/17 (64%), Positives = 14/17 (82%), Gaps = 1/17 (5%)
 Frame = -2

Query: 714 RTLYYYL-ILVSCVLIA 667
           RTLYY+  ++V CVLIA
Sbjct: 230 RTLYYFFNLIVPCVLIA 246


>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 22.6 bits (46), Expect = 5.2
 Identities = 10/31 (32%), Positives = 15/31 (48%)
 Frame = +1

Query: 802 VYRSHEQQHYFNTPYQLSLPPPGHDRNVLSD 894
           V+    Q+  FN P Q  +  P  D+  +SD
Sbjct: 192 VFLEGSQKRKFNVPLQPVVSDPIFDKKAMSD 222


>AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.
          Length = 602

 Score = 22.6 bits (46), Expect = 5.2
 Identities = 10/31 (32%), Positives = 15/31 (48%)
 Frame = +1

Query: 802 VYRSHEQQHYFNTPYQLSLPPPGHDRNVLSD 894
           V+    Q+  FN P Q  +  P  D+  +SD
Sbjct: 192 VFLEGSQKRKFNVPLQPVVSDPIFDKKAMSD 222


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 246,076
Number of Sequences: 438
Number of extensions: 5447
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 29992872
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)