Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP21_F_G12
         (987 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP35G2.08c |air1||zinc knuckle TRAMP complex subunit Air1|Schi...    31   0.25 
SPAC13D6.02c |byr3||zinc finger protein Byr3|Schizosaccharomyces...    30   0.58 
SPBC16G5.06 |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    27   5.4  
SPBC8D2.16c |||DUF171 family protein|Schizosaccharomyces pombe|c...    26   7.1  
SPBC19G7.06 |mbx1||MADS-box transcription factor Mbx1|Schizosacc...    26   9.4  
SPBC577.10 |||20S proteasome component beta 7|Schizosaccharomyce...    26   9.4  

>SPBP35G2.08c |air1||zinc knuckle TRAMP complex subunit
           Air1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 313

 Score = 31.1 bits (67), Expect = 0.25
 Identities = 13/29 (44%), Positives = 16/29 (55%), Gaps = 2/29 (6%)
 Frame = -1

Query: 387 CHNCQXYGHSSRXCHARPXCVKC--LDDH 307
           CHNC+  GH S+ C     C  C  +DDH
Sbjct: 89  CHNCKGNGHISKDC-PHVLCTTCGAIDDH 116


>SPAC13D6.02c |byr3||zinc finger protein Byr3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 179

 Score = 29.9 bits (64), Expect = 0.58
 Identities = 14/54 (25%), Positives = 19/54 (35%)
 Frame = -1

Query: 390 QCHNCQXYGHSSRXCHARPXCVKCLDDHAXXXXXXXXXXXTEPPXCVLCRTQGH 229
           +C+NC   GH +R C     C  C   +             +   C  C T GH
Sbjct: 18  RCYNCGENGHQARECTKGSICYNC---NQTGHKASECTEPQQEKTCYACGTAGH 68



 Score = 27.9 bits (59), Expect = 2.3
 Identities = 9/23 (39%), Positives = 11/23 (47%)
 Frame = -1

Query: 387 CHNCQXYGHSSRXCHARPXCVKC 319
           C+ C  YGH +R C     C  C
Sbjct: 118 CYACGSYGHQARDCTMGVKCYSC 140


>SPBC16G5.06 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 230

 Score = 26.6 bits (56), Expect = 5.4
 Identities = 13/44 (29%), Positives = 22/44 (50%)
 Frame = +2

Query: 83  QTETSRLCSAMCVLAASAGVVELSADSMSPSNQXLEDKLYNSIH 214
           Q  TS    +    ++S+G   ++A  +S SN+ +     NSIH
Sbjct: 70  QPSTSSSSPSSTSTSSSSGTSVITASDVSASNEIISSSTNNSIH 113


>SPBC8D2.16c |||DUF171 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 315

 Score = 26.2 bits (55), Expect = 7.1
 Identities = 12/21 (57%), Positives = 14/21 (66%)
 Frame = -2

Query: 530 DAGGSHTIWFSSPSSLPPRVR 468
           +AG SH +  SSPS L PR R
Sbjct: 153 NAGLSHNVIVSSPSVLAPRTR 173


>SPBC19G7.06 |mbx1||MADS-box transcription factor
           Mbx1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 436

 Score = 25.8 bits (54), Expect = 9.4
 Identities = 10/19 (52%), Positives = 14/19 (73%)
 Frame = -1

Query: 597 SLVKADXLEQGLPVNSVHR 541
           S + AD L+ G+P NSV+R
Sbjct: 399 STIPADQLKDGVPTNSVYR 417


>SPBC577.10 |||20S proteasome component beta 7|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 262

 Score = 25.8 bits (54), Expect = 9.4
 Identities = 17/40 (42%), Positives = 22/40 (55%)
 Frame = -2

Query: 422 WXPLIKKALRASATIVXCTGILPVIVTRALDASSVWTITP 303
           W  L K++ RA  TI  C  +L     R+L+  SV TITP
Sbjct: 196 WKTLSKESARA--TIDECMRVLFYRDARSLNKFSVATITP 233


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,073,337
Number of Sequences: 5004
Number of extensions: 49669
Number of successful extensions: 103
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 99
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 103
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 509282430
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)