Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP21_F_G10
         (935 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein homolog|Schizosacch...    27   3.8  
SPAC25B8.05 |||pseudouridylate synthase |Schizosaccharomyces pom...    27   5.0  
SPBC2A9.02 |||NAD dependent epimerase/dehydratase family protein...    26   8.8  
SPBC1652.01 |||conserved fungal protein|Schizosaccharomyces pomb...    26   8.8  

>SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein
            homolog|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2609

 Score = 27.1 bits (57), Expect = 3.8
 Identities = 11/30 (36%), Positives = 18/30 (60%)
 Frame = -2

Query: 301  IFLVLKCVNLLFINGQDINWSRLSTHLKPS 212
            +F +L C+     +GQ  ++SRL  +L PS
Sbjct: 1266 LFSILTCIYNRITSGQGFSYSRLLVYLPPS 1295


>SPAC25B8.05 |||pseudouridylate synthase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 450

 Score = 26.6 bits (56), Expect = 5.0
 Identities = 17/66 (25%), Positives = 26/66 (39%), Gaps = 1/66 (1%)
 Frame = -2

Query: 358 PRTVPHAVAFTV-TVSHEWXIFLVLKCVNLLFINGQDINWSRLSTHLKPSSTLNFNLHFL 182
           P T P     T  T+ H+W    + + +    ++  D N  R     + SST+N     L
Sbjct: 349 PTTAPRIAKHTYETIYHQWHSLRIREQIASFMLDIADHNVKRYGKSEESSSTMNVGEGLL 408

Query: 181 LSCKYY 164
              K Y
Sbjct: 409 KRTKKY 414


>SPBC2A9.02 |||NAD dependent epimerase/dehydratase family
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 295

 Score = 25.8 bits (54), Expect = 8.8
 Identities = 12/36 (33%), Positives = 18/36 (50%)
 Frame = +3

Query: 684 IIAQSXKLGLXISFTNXPELPRXLGYXTFARXRXSG 791
           +++ + KLG  IS    P +PR LG  T  +    G
Sbjct: 113 VLSSNGKLGTEISEVPQPPIPRQLGEVTTLKFASQG 148


>SPBC1652.01 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 386

 Score = 25.8 bits (54), Expect = 8.8
 Identities = 18/52 (34%), Positives = 25/52 (48%), Gaps = 2/52 (3%)
 Frame = +3

Query: 372 RRWAYWLGLRLPTRSSISPLATYRLLPVTCETDKDSQ--SPGHCRWHLKS*T 521
           RR  + L L LP+ + ++P    RLL    E+ K  Q    G  RW L+  T
Sbjct: 129 RRLLHHLSLMLPSFNELTPTQQRRLLTRALESKKGIQFEKIGWGRWVLRDST 180


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,934,316
Number of Sequences: 5004
Number of extensions: 51120
Number of successful extensions: 120
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 120
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 120
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 475330268
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)