Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP21_F_G10
         (935 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_01_0607 + 4464669-4465367,4466212-4467369,4468005-4469114,446...    29   4.0  
10_08_0252 - 16191136-16191279,16191639-16191750,16191833-161919...    29   5.3  

>03_01_0607 +
           4464669-4465367,4466212-4467369,4468005-4469114,
           4469273-4469314,4469496-4469572,4469671-4469755,
           4469818-4469901,4469988-4470089,4470181-4470279,
           4470794-4470919
          Length = 1193

 Score = 29.5 bits (63), Expect = 4.0
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = -3

Query: 402 SEGPASKPSAANTDTRAPCHMPSPSP 325
           S GPAS PS + T + AP  + +P P
Sbjct: 28  SSGPASAPSTSTTSSSAPLPVAAPPP 53


>10_08_0252 -
           16191136-16191279,16191639-16191750,16191833-16191924,
           16192564-16192641,16192764-16192796,16193712-16193771,
           16193912-16193999,16194155-16194180
          Length = 210

 Score = 29.1 bits (62), Expect = 5.3
 Identities = 19/64 (29%), Positives = 28/64 (43%), Gaps = 5/64 (7%)
 Frame = +3

Query: 306 HSCETVT----VKATACGTVRGCR-CSRRWAYWLGLRLPTRSSISPLATYRLLPVTCETD 470
           H CE  T    ++A  CG V GCR C       L + L  R  I      +++   C+ +
Sbjct: 8   HGCEHYTRGCRIRAPCCGEVFGCRHCHNEAKNSLEIHLNDRHEIPRHEIKKVICSLCDKE 67

Query: 471 KDSQ 482
           +D Q
Sbjct: 68  QDVQ 71


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,838,699
Number of Sequences: 37544
Number of extensions: 356193
Number of successful extensions: 818
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 800
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 818
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2682675460
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)