Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP21_F_G06
         (928 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC6B12.11 |drc1|sld1|DNA replication protein Drc1|Schizosaccha...    30   0.40 
SPCC18.02 |||membrane transporter|Schizosaccharomyces pombe|chr ...    29   0.93 
SPAC22E12.09c |krp1|krp|kexin|Schizosaccharomyces pombe|chr 1|||...    27   2.8  
SPBC30D10.15 |||snoRNP assembly factor |Schizosaccharomyces pomb...    27   5.0  
SPBC19F5.05c |ppp1|SPBC25D12.01c|pescadillo-family BRCT domain p...    27   5.0  
SPBC17G9.09 |tif213||translation initiation factor eIF2 gamma su...    26   6.6  
SPBC19C7.02 |ubr1|SPBC32F12.14|N-end-recognizing protein Ubr1|Sc...    26   8.7  
SPAC1D4.07c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual        26   8.7  

>SPAC6B12.11 |drc1|sld1|DNA replication protein
           Drc1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 337

 Score = 30.3 bits (65), Expect = 0.40
 Identities = 23/92 (25%), Positives = 38/92 (41%)
 Frame = +3

Query: 231 QGDNVPRAPSTADHPILPSKIDDVQLDPNRRYVRSVTNPENNEASIEHSHHTVDTGLDQP 410
           + +  P+AP      + P  +D   L P  +  R V N   + + I  SH      +DQ 
Sbjct: 83  EANESPKAPRNDYLQVTPKTVDKSLLGPTPQLSRRVLNLLEDMSPIADSH------VDQI 136

Query: 411 IESHRNTRDLRFLYPRGKLPVPTLPPFNPKPI 506
            +   NT ++          +PT P  NP+P+
Sbjct: 137 SDIKHNTSEI------SSTMIPTTPSKNPEPV 162


>SPCC18.02 |||membrane transporter|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 448

 Score = 29.1 bits (62), Expect = 0.93
 Identities = 14/44 (31%), Positives = 22/44 (50%)
 Frame = -2

Query: 630 VSGTFPILGKYPSESESAHYIAAILLDHPTHVVGNGFPYQYILA 499
           ++G        P   +S+HY+A   L+HPT    NG PY  + +
Sbjct: 351 INGVVLAFTSSPGFVQSSHYVAEYELEHPTFFGHNG-PYTQLFS 393


>SPAC22E12.09c |krp1|krp|kexin|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 709

 Score = 27.5 bits (58), Expect = 2.8
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = +3

Query: 525 RYRRHASDDQEELRQYNEHFLIPRDIF 605
           RY+R AS+  E L +++ HF I   +F
Sbjct: 99  RYKRDASESDELLNEFSNHFGISDPLF 125


>SPBC30D10.15 |||snoRNP assembly factor |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 516

 Score = 26.6 bits (56), Expect = 5.0
 Identities = 23/81 (28%), Positives = 33/81 (40%), Gaps = 2/81 (2%)
 Frame = +3

Query: 279 LPSKIDDVQLDPN--RRYVRSVTNPENNEASIEHSHHTVDTGLDQPIESHRNTRDLRFLY 452
           LP + +   L+ N  R Y    TN  +N  +   +     + L    ES  N      +Y
Sbjct: 395 LPGEANFQSLNQNNVRNYPFYQTNQGSNPPAKRFTQEPPSSSLYSLSESSINYSTQSPMY 454

Query: 453 PRGKLPVPTLPPFNPKPIYID 515
                P P+ PPF+  PIY D
Sbjct: 455 YNYNYPQPSFPPFH--PIYND 473


>SPBC19F5.05c |ppp1|SPBC25D12.01c|pescadillo-family BRCT domain
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 607

 Score = 26.6 bits (56), Expect = 5.0
 Identities = 15/47 (31%), Positives = 20/47 (42%), Gaps = 2/47 (4%)
 Frame = -1

Query: 370 SMDASLFSGLVTL--RTYLRFGSSCTSSIFEGRIGWSAVLGARGTLS 236
           S + SLFS       R   RF        F G++GW  +LG+    S
Sbjct: 347 SSNTSLFSNFTFFLSREVPRFSLEFVIRAFGGKVGWDPILGSGSPFS 393


>SPBC17G9.09 |tif213||translation initiation factor eIF2 gamma
           subunit|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 446

 Score = 26.2 bits (55), Expect = 6.6
 Identities = 19/50 (38%), Positives = 23/50 (46%), Gaps = 3/50 (6%)
 Frame = -2

Query: 237 HLDTAIAVPGQLVALYVLSGAVLAVA*RSAG*TSGTK---PEQRTAPELN 97
           H D  IAVPG L+ +       L  A R  G   G+K   PE  T  E+N
Sbjct: 305 HNDLKIAVPGGLIGVGTTVDPTLCRADRLVGQVLGSKGNLPEVYTELEIN 354


>SPBC19C7.02 |ubr1|SPBC32F12.14|N-end-recognizing protein
            Ubr1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1958

 Score = 25.8 bits (54), Expect = 8.7
 Identities = 13/31 (41%), Positives = 20/31 (64%), Gaps = 1/31 (3%)
 Frame = -2

Query: 300  RRRFSKEESDGLQYLAHEE-HCHLDTAIAVP 211
            RRR+SK+ S  L+ + +EE H  L + I +P
Sbjct: 946  RRRYSKQHSKHLESVVYEEYHPILHSNITIP 976


>SPAC1D4.07c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 146

 Score = 25.8 bits (54), Expect = 8.7
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = -1

Query: 733 HFKIHCIFMQNY*KYHLNLSNYDS 662
           H + HCI  + Y   HL +SN+ S
Sbjct: 111 HLQTHCIKRKTYCVKHLAISNFQS 134


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,783,274
Number of Sequences: 5004
Number of extensions: 83703
Number of successful extensions: 254
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 238
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 254
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 469338710
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)