Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP21_F_G06
         (928 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ435337-1|ABD92652.1|  135|Apis mellifera OBP20 protein.              29   0.079
DQ435336-1|ABD92651.1|  135|Apis mellifera OBP19 protein.              29   0.079
AY350618-1|AAQ57660.1|  425|Apis mellifera complementary sex det...    27   0.18 
DQ325089-1|ABD14103.1|  185|Apis mellifera complementary sex det...    24   2.3  
DQ325088-1|ABD14102.1|  185|Apis mellifera complementary sex det...    24   2.3  
AY569704-1|AAS86657.1|  426|Apis mellifera complementary sex det...    23   3.0  
AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein ...    23   3.0  
DQ325083-1|ABD14097.1|  189|Apis mellifera complementary sex det...    23   3.9  

>DQ435337-1|ABD92652.1|  135|Apis mellifera OBP20 protein.
          Length = 135

 Score = 28.7 bits (61), Expect = 0.079
 Identities = 13/44 (29%), Positives = 26/44 (59%)
 Frame = +3

Query: 549 DQEELRQYNEHFLIPRDIFQE*GKFQKQKISECTPIFIES*LLK 680
           + E+ ++YNE  L   +I  E G F++  + E T I+++  ++K
Sbjct: 55  EDEKPQRYNECILKQFNIVDESGNFKENIVQELTSIYLDENVIK 98


>DQ435336-1|ABD92651.1|  135|Apis mellifera OBP19 protein.
          Length = 135

 Score = 28.7 bits (61), Expect = 0.079
 Identities = 13/44 (29%), Positives = 26/44 (59%)
 Frame = +3

Query: 549 DQEELRQYNEHFLIPRDIFQE*GKFQKQKISECTPIFIES*LLK 680
           + E+ ++YNE  L   +I  E G F++  + E T I+++  ++K
Sbjct: 55  EDEKPQRYNECILKQFNIVDESGNFKENIVQELTSIYLDENVIK 98


>AY350618-1|AAQ57660.1|  425|Apis mellifera complementary sex
           determiner protein.
          Length = 425

 Score = 27.5 bits (58), Expect = 0.18
 Identities = 16/59 (27%), Positives = 30/59 (50%), Gaps = 4/59 (6%)
 Frame = -1

Query: 778 VKNTYEYLHYLN*NGHF----KIHCIFMQNY*KYHLNLSNYDSMNIGVHSEIFCFWNFP 614
           + N Y+Y +Y N N ++      +  +  NY K + N++  + + + V   I+C  NFP
Sbjct: 318 LSNNYKYSNYNNYNNNYNNYNNYNNNYNNNYKKLYYNINYIEQIPVPVPVPIYC-GNFP 375


>DQ325089-1|ABD14103.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 23.8 bits (49), Expect = 2.3
 Identities = 19/74 (25%), Positives = 31/74 (41%)
 Frame = +1

Query: 589 FRGIFSKNRESSRNKRFRSAXXXXXXXXXXXXXDIFNSSA*KYNVF*SGRFNSNNVSTRT 768
           +R     ++E SR++  R                I N++  KYN      +N+NN +   
Sbjct: 55  YRKYRETSKERSRDRTERERSREPKIISSLSNNTIHNNNY-KYN------YNNNNYNNNN 107

Query: 769 YSLP*YIN*INLNQ 810
           Y+   Y N IN+ Q
Sbjct: 108 YNKKLYYNIINIEQ 121


>DQ325088-1|ABD14102.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 23.8 bits (49), Expect = 2.3
 Identities = 19/74 (25%), Positives = 31/74 (41%)
 Frame = +1

Query: 589 FRGIFSKNRESSRNKRFRSAXXXXXXXXXXXXXDIFNSSA*KYNVF*SGRFNSNNVSTRT 768
           +R     ++E SR++  R                I N++  KYN      +N+NN +   
Sbjct: 55  YRKYRETSKERSRDRAERERSREPKIISSLSNNTIHNNNY-KYN------YNNNNYNNNN 107

Query: 769 YSLP*YIN*INLNQ 810
           Y+   Y N IN+ Q
Sbjct: 108 YNKKLYYNIINIEQ 121


>AY569704-1|AAS86657.1|  426|Apis mellifera complementary sex
           determiner protein.
          Length = 426

 Score = 23.4 bits (48), Expect = 3.0
 Identities = 11/30 (36%), Positives = 17/30 (56%)
 Frame = -1

Query: 703 NY*KYHLNLSNYDSMNIGVHSEIFCFWNFP 614
           NY K + N+ N + + + V   I+C  NFP
Sbjct: 348 NYKKLYYNIINIEQIPVPVPVPIYC-GNFP 376


>AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein 1
           protein.
          Length = 500

 Score = 23.4 bits (48), Expect = 3.0
 Identities = 9/36 (25%), Positives = 17/36 (47%)
 Frame = +2

Query: 239 QCSSCAKYCRPSDSSFENRRRAARSKPKVCSQCHQS 346
           QC  C+K     ++   +RR   + +P  C  C ++
Sbjct: 121 QCEYCSKSFSVKENLSVHRRIHTKERPYKCDVCERA 156



 Score = 21.8 bits (44), Expect = 9.1
 Identities = 10/33 (30%), Positives = 14/33 (42%)
 Frame = +2

Query: 239 QCSSCAKYCRPSDSSFENRRRAARSKPKVCSQC 337
           +C+ C+K    S     + R     KP VC  C
Sbjct: 177 KCTVCSKTFIQSGQLVIHMRTHTGEKPYVCKAC 209


>DQ325083-1|ABD14097.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 23.0 bits (47), Expect = 3.9
 Identities = 14/61 (22%), Positives = 25/61 (40%)
 Frame = +1

Query: 589 FRGIFSKNRESSRNKRFRSAXXXXXXXXXXXXXDIFNSSA*KYNVF*SGRFNSNNVSTRT 768
           +R     ++E SR++  R                I N++  KYN      +N+NN + + 
Sbjct: 56  YRKYRETSKERSRDRTERERSREPKIISSLSNKTIHNNNNYKYNYNNKYNYNNNNYNKKL 115

Query: 769 Y 771
           Y
Sbjct: 116 Y 116


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 262,153
Number of Sequences: 438
Number of extensions: 6554
Number of successful extensions: 14
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 30234750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)