Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP21_F_G04
         (917 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1539.06 |||acyl-coenzyme A binding protein |Schizosaccharomy...    32   0.13 

>SPBC1539.06 |||acyl-coenzyme A binding protein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 87

 Score = 31.9 bits (69), Expect = 0.13
 Identities = 25/78 (32%), Positives = 35/78 (44%)
 Frame = +3

Query: 168 LKNXKALPTDAQLLNLYAXFXQATXGDADPSQ*TWSSTLEG*SQI*RLAXTGRXFXKDDA 347
           +K  K  P   +LL LYA F QAT GD +  +      L+G  +        +   K+DA
Sbjct: 12  VKELKETPNSDELLKLYALFKQATVGDNNTEK-PGLLDLKGKFKW-NAWEELKGKSKEDA 69

Query: 348 QKAYIEIVEGLIASIGLK 401
              YI  V+ L    G+K
Sbjct: 70  ASEYISFVDELKTKYGMK 87



 Score = 30.3 bits (65), Expect = 0.40
 Identities = 12/19 (63%), Positives = 15/19 (78%)
 Frame = +1

Query: 265 RPGLLHLKGKAKFDAWHXL 321
           +PGLL LKGK K++AW  L
Sbjct: 43  KPGLLDLKGKFKWNAWEEL 61


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,744,681
Number of Sequences: 5004
Number of extensions: 46902
Number of successful extensions: 74
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 71
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 74
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 466510270
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)