Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP21_F_F23
         (925 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC343.20 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||...    31   0.30 
SPCC4B3.11c |||conserved eukaryotic protein|Schizosaccharomyces ...    29   0.93 
SPCC16C4.03 |pin1||peptidyl-prolyl cis-trans isomerase Pin1|Schi...    27   3.7  

>SPAC343.20 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 113

 Score = 30.7 bits (66), Expect = 0.30
 Identities = 17/49 (34%), Positives = 25/49 (51%)
 Frame = -1

Query: 283 TSLTRFLSGMALYSAFSCHRSLLLKLVPTIRSLHCITQTKDKNMKIKXG 137
           T+ T+F S    Y A + H SLL KL+     L+ +   K K ++I  G
Sbjct: 58  TNFTKF-SKFVYYLAITLHTSLLTKLIYCHADLYALQSIKYKRLRINNG 105


>SPCC4B3.11c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 116

 Score = 29.1 bits (62), Expect = 0.93
 Identities = 16/50 (32%), Positives = 23/50 (46%)
 Frame = +3

Query: 285 FFSDPGQQLIMGIIARDLDHSDAEASITAGGIGFSYANIKLKSPRGSGLN 434
           F+S PG++ I  I+   L  S       +GG G  Y  + +KS    G N
Sbjct: 27  FYSTPGERRIKDILTEKLSPSSLRVIDVSGGCGSMY-QVAIKSKAFQGKN 75


>SPCC16C4.03 |pin1||peptidyl-prolyl cis-trans isomerase
           Pin1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 175

 Score = 27.1 bits (57), Expect = 3.7
 Identities = 19/57 (33%), Positives = 26/57 (45%)
 Frame = +1

Query: 229 GKKKPNITPSHSRNESKKYFFRIRDNN*LWVL*PAT*TTRMLKQVLLQEASVSLMPT 399
           G  KP I    SR+ ++ YFF    +  LW   PA      LK+ +  E   S+ PT
Sbjct: 5   GLPKPWIVKI-SRSRNRPYFFNTETHESLWEP-PAATDMAALKKFIANELQESVTPT 59


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,186,708
Number of Sequences: 5004
Number of extensions: 44379
Number of successful extensions: 103
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 101
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 103
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 467341524
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)