Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP21_F_F19
(1057 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M... 30 0.63
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 29 1.5
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit... 28 1.9
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 28 1.9
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe... 27 3.4
SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr... 27 5.9
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 27 5.9
>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||Manual
Length = 309
Score = 29.9 bits (64), Expect = 0.63
Identities = 17/67 (25%), Positives = 20/67 (29%)
Frame = +2
Query: 857 PAXTXPXRXXQPPSXLRRGXKAPPXXPRXXXTXXPXXIXXXXTXPPXXPPXXXRAXPPPP 1036
P + P R PP P P + P P P A PP P
Sbjct: 139 PPTSAPPRPSIPPPSPASAPPIPSKAPPIPSSLPPPAQPAAPVKSPPSAPSLPSAVPPMP 198
Query: 1037 PRXGXPP 1057
P+ PP
Sbjct: 199 PKVPPPP 205
Score = 27.5 bits (58), Expect = 3.4
Identities = 14/48 (29%), Positives = 17/48 (35%)
Frame = +1
Query: 805 PXPGXPXXRXTXPLXMXPCPNXPRPXXXTPVRTPAGXXSAPXSAPPXA 948
P P P P P P+ P P + P+ P S PP A
Sbjct: 128 PAPPTPQSELRPPTSAPPRPSIPPPSPASAPPIPSKAPPIPSSLPPPA 175
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 28.7 bits (61), Expect = 1.5
Identities = 14/39 (35%), Positives = 14/39 (35%)
Frame = +3
Query: 924 PXXXPAXXXQXPPXXXXPXXRXPPXXPRXNXARXPPPPP 1040
P PA PP PP P A PPPPP
Sbjct: 742 PTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPP 780
Score = 26.6 bits (56), Expect = 5.9
Identities = 11/31 (35%), Positives = 12/31 (38%)
Frame = +2
Query: 569 PTKPRXXEXSXPPXPXXXPXPPPXXWGPXPP 661
P P + P P P P P GP PP
Sbjct: 734 PPPPAVIVPTPAPAPIPVPPPAPIMGGPPPP 764
>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
hand and WH2 motif |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1794
Score = 28.3 bits (60), Expect = 1.9
Identities = 17/62 (27%), Positives = 19/62 (30%), Gaps = 1/62 (1%)
Frame = +2
Query: 536 PXXTXXXRQXXPTKPRXXEXSXPPXPXXXPXPPPXXWGP-XPPXTXLXPXPXPGGXXXXX 712
P T R P+ + PP P P PP P PP P P
Sbjct: 1686 PVSTPPVRPQSAAPPQMSAPTPPPPPMSVPPPPSAPPMPAGPPSAPPPPLPASSAPSVPN 1745
Query: 713 PG 718
PG
Sbjct: 1746 PG 1747
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 28.3 bits (60), Expect = 1.9
Identities = 20/74 (27%), Positives = 22/74 (29%), Gaps = 2/74 (2%)
Frame = +2
Query: 500 GXGXVXRPPXXAPXXTXXXRQXXPT-KPRXXEXSXPPXPXXXPXPPPXXW-GPXPPXTXL 673
G V +P AP P KP PP P P P P PP +
Sbjct: 1157 GAPPVPKPSVAAPPVPAPSSGIPPVPKPAAGVPPVPPPSEAPPVPKPSVGVPPVPPPSTA 1216
Query: 674 XPXPXPGGXXXXXP 715
P P P P
Sbjct: 1217 PPVPTPSAGLPPVP 1230
Score = 26.6 bits (56), Expect = 5.9
Identities = 21/68 (30%), Positives = 23/68 (33%)
Frame = +3
Query: 852 GXLPXPTPXVXXNPRPXSXXXXKRPXXXPAXXXQXPPXXXXPXXRXPPXXPRXNXARXPP 1031
G P P P V P P P PA P P PP P+ + P
Sbjct: 1157 GAPPVPKPSVAAPPVPAPSSGIP-PVPKPAAGVPPVP----PPSEAPPV-PKPSVGVPPV 1210
Query: 1032 PPPXAAXP 1055
PPP A P
Sbjct: 1211 PPPSTAPP 1218
>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 273
Score = 27.5 bits (58), Expect = 3.4
Identities = 17/50 (34%), Positives = 17/50 (34%)
Frame = -2
Query: 753 GGXXGXXXXXXAPGXXXXXPPGXGXGXRXVXGGXGPQXXGGGXGSXXGXG 604
G G PG P G G G GG G GGG G G G
Sbjct: 225 GFGGGPGGFEGGPGGFGGGPGGFGGGLGGFGGGPG--GFGGGPGGHGGPG 272
>SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 305
Score = 26.6 bits (56), Expect = 5.9
Identities = 19/48 (39%), Positives = 20/48 (41%)
Frame = -1
Query: 745 PGXXGVPXGARXXXGXPPGVXXGXQGCXGGXGPPAXGGGXGXXXXXRG 602
PG G G+R G G G G GG G A GGG G RG
Sbjct: 5 PGSRGGRGGSRGGRG---GFNGGRGGFGGGRG-GARGGGRGGARGGRG 48
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 26.6 bits (56), Expect = 5.9
Identities = 19/67 (28%), Positives = 22/67 (32%), Gaps = 1/67 (1%)
Frame = +3
Query: 843 PXDGXLPXPTPXVXXNPRPXSXXXXKRPXXX-PAXXXQXPPXXXXPXXRXPPXXPRXNXA 1019
P +P P+ +P P S P PA P P R N
Sbjct: 251 PAPPPIPPPSNGTVSSP-PNSPPRPIAPVSMNPAINSTSKPPLPPPSSRVSAAALAANKK 309
Query: 1020 RXPPPPP 1040
R PPPPP
Sbjct: 310 RPPPPPP 316
Score = 26.6 bits (56), Expect = 5.9
Identities = 17/62 (27%), Positives = 18/62 (29%), Gaps = 2/62 (3%)
Frame = +2
Query: 512 VXRPPXXAPXXTXXXRQXXPTKPRXXEXSXPPXPXXXPXPPPXXWG--PXPPXTXLXPXP 685
V PP P P + PP P P PP G PP P P
Sbjct: 417 VPTPPSLPPSAPPSLPPSAPPSLPMGAPAAPPLPPSAPIAPPLPAGMPAAPPLPPAAPAP 476
Query: 686 XP 691
P
Sbjct: 477 PP 478
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.315 0.141 0.470
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,552,568
Number of Sequences: 5004
Number of extensions: 15598
Number of successful extensions: 101
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 24
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 83
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 555217708
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
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