Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP21_F_F15
         (907 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC4B4.02c |nca2||mitochondrial protein Nca2 |Schizosaccharomyc...    30   0.52 
SPBC3F6.05 |rga1||GTPase activating protein Rga1|Schizosaccharom...    27   2.8  
SPCC4F11.04c |||mannosyltransferase complex subunit |Schizosacch...    27   3.7  
SPBC1683.09c |frp1||ferric-chelate reductase Frp1|Schizosaccharo...    27   3.7  
SPCC5E4.05c |||serine hydrolase |Schizosaccharomyces pombe|chr 3...    26   6.4  
SPAC16A10.01 |||DUF1212 family protein|Schizosaccharomyces pombe...    26   8.5  

>SPBC4B4.02c |nca2||mitochondrial protein Nca2 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 573

 Score = 29.9 bits (64), Expect = 0.52
 Identities = 26/101 (25%), Positives = 45/101 (44%)
 Frame = +1

Query: 313 GQKISDRFEISNDPNIAADKVAQGTFAYYDNKNFLKYITVRRQNGFIMETIDNTTNLTSI 492
           GQKI +   + +  +I  D ++  T  Y++ K + +   + R    I  T+ +    T I
Sbjct: 244 GQKIDNSESLPDILSITLDNLSHPTDEYFEAKAYFRPSAIERNWPKIFVTLLSAWLSTQI 303

Query: 493 STKNNNERNLHIMSDCVVNIPISIGFNKNSPLKPLTDIYIT 615
            TKN     L I  D + +   ++ F  N   KP+  I+ T
Sbjct: 304 ITKNRTSIRLWI--DYLYS--TAVDFYTNWIQKPILGIFDT 340


>SPBC3F6.05 |rga1||GTPase activating protein Rga1|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1150

 Score = 27.5 bits (58), Expect = 2.8
 Identities = 22/80 (27%), Positives = 37/80 (46%), Gaps = 2/80 (2%)
 Frame = +1

Query: 478  NLTSISTKNNNERNLHIMSDCVVNIPISIGFNKNSP--LKPLTDIYITRIVEVGLVEKWL 651
            ++  +  KN N R L  +SD +   P SI + + +P  L  L   ++  + +  L  K L
Sbjct: 878  SVVGVFRKNGNIRRLKELSDMLDVSPDSIDYEQETPIQLAALLKKFLRELPDPLLTFK-L 936

Query: 652  NDAMYTIKTLETNEEEIKAL 711
                 T   LE+ EE ++ L
Sbjct: 937  FGLFITSSKLESEEERMRVL 956


>SPCC4F11.04c |||mannosyltransferase complex subunit
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 345

 Score = 27.1 bits (57), Expect = 3.7
 Identities = 12/35 (34%), Positives = 21/35 (60%)
 Frame = +2

Query: 275 NYEFFSRFLGMKLVKKFLTDSKLVTTLILRLTKSL 379
           +Y FFS+ L  + V++F+T  +   TL L L + +
Sbjct: 311 SYMFFSKLLDSRYVQRFVTSKRKQPTLPLALQEDV 345


>SPBC1683.09c |frp1||ferric-chelate reductase
           Frp1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 564

 Score = 27.1 bits (57), Expect = 3.7
 Identities = 9/24 (37%), Positives = 16/24 (66%)
 Frame = +2

Query: 32  FLKILILVYVWDVACRVITETTNR 103
           ++K+ + VYV+D  CR++    NR
Sbjct: 246 YMKVCVAVYVFDRGCRMLRSFLNR 269


>SPCC5E4.05c |||serine hydrolase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 378

 Score = 26.2 bits (55), Expect = 6.4
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = +3

Query: 171 ASMTAILANPAPRVTIDTLVELAASK 248
           AS T +++ PAPRVT     ++  +K
Sbjct: 353 ASTTKVISEPAPRVTTAATADIVTNK 378


>SPAC16A10.01 |||DUF1212 family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 830

 Score = 25.8 bits (54), Expect = 8.5
 Identities = 14/40 (35%), Positives = 24/40 (60%), Gaps = 1/40 (2%)
 Frame = +1

Query: 466 DNTTNLTSISTKNNNERNLHIMSDCV-VNIPISIGFNKNS 582
           + TTN T+++T+N+   +L      V + I I+IGF  +S
Sbjct: 775 NTTTNTTTVTTENSQNSSLEFGFTMVEIAIGIAIGFLASS 814


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,459,867
Number of Sequences: 5004
Number of extensions: 71943
Number of successful extensions: 250
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 237
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 250
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 458501510
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)