Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP21_F_F15
(907 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_1083 - 34403769-34403774,34403819-34403918,34404235-344043... 32 0.55
08_02_0880 + 22203440-22204324,22204763-22204876,22204964-222054... 31 1.7
02_05_0881 + 32473208-32473575,32473742-32473826,32473991-324740... 29 5.1
01_06_0366 - 28779899-28780543,28780813-28781076,28781165-287814... 29 5.1
11_06_0132 - 20431122-20431477,20431739-20433758 29 6.7
04_01_0430 + 5651326-5651820,5651886-5652124,5652265-5652507,565... 29 6.7
01_07_0166 + 41595729-41595735,41595914-41596863 29 6.7
07_03_1154 - 24402550-24405073,24405909-24406330,24407318-24408856 28 8.9
04_04_0446 - 25288154-25288863,25288949-25289135,25289331-25291061 28 8.9
>01_06_1083 -
34403769-34403774,34403819-34403918,34404235-34404318,
34404427-34404506,34404614-34404707,34404796-34404887,
34405335-34405425,34405617-34405719,34405919-34406008,
34406154-34406235,34406434-34406481,34406601-34406897,
34406992-34407078,34408047-34408247,34408329-34408533,
34409362-34410152
Length = 816
Score = 32.3 bits (70), Expect = 0.55
Identities = 15/42 (35%), Positives = 20/42 (47%)
Frame = +1
Query: 379 QGTFAYYDNKNFLKYITVRRQNGFIMETIDNTTNLTSISTKN 504
Q FA D +F+ YI+VR + +ME I N S N
Sbjct: 550 QNIFATNDTSSFIFYISVRNSSSLVMELIGNRFGCNEASNSN 591
>08_02_0880 +
22203440-22204324,22204763-22204876,22204964-22205455,
22205646-22205819,22206589-22206978,22209927-22210022,
22210645-22210760,22210872-22211042,22211126-22211285,
22211388-22211573,22211665-22211793,22211918-22211996,
22212159-22212268
Length = 1033
Score = 30.7 bits (66), Expect = 1.7
Identities = 16/49 (32%), Positives = 27/49 (55%), Gaps = 4/49 (8%)
Frame = +3
Query: 48 FLYTYGMLLVVSLPKLPTGWSIRLLTGWY----WLYCILLVVSYRASMT 182
F Y++ +L+VV L L GW + L+T W+ W+Y + ++ Y T
Sbjct: 654 FWYSHHLLIVVYLLLLVHGWFMFLVTKWHQRTTWMYIAVPLMLYVGERT 702
>02_05_0881 +
32473208-32473575,32473742-32473826,32473991-32474053,
32474199-32474241,32474737-32474796,32475001-32475301,
32475554-32475668,32476168-32476272,32476338-32476517
Length = 439
Score = 29.1 bits (62), Expect = 5.1
Identities = 9/30 (30%), Positives = 16/30 (53%)
Frame = +2
Query: 59 VWDVACRVITETTNRLVYPTPDWLVLVVLY 148
+W + C V+ T R+ YP +W V ++
Sbjct: 358 IWSLGCTVLEMLTQRIPYPDDNWFYQVSVF 387
>01_06_0366 - 28779899-28780543,28780813-28781076,28781165-28781431,
28781546-28781774,28781868-28781985,28782229-28782486,
28782585-28782858,28782950-28783475,28784289-28784527,
28784626-28784847,28784912-28784914,28785124-28785299,
28786147-28786201,28786288-28786557
Length = 1181
Score = 29.1 bits (62), Expect = 5.1
Identities = 23/91 (25%), Positives = 41/91 (45%)
Frame = +1
Query: 283 IFFKIPWDEIGQKISDRFEISNDPNIAADKVAQGTFAYYDNKNFLKYITVRRQNGFIMET 462
+FF + +G +S +S + A D A F+ D K+ I G IME
Sbjct: 880 VFFALVLAAVG--VSQSSALSTNATKARDS-AISIFSIIDRKS---RIDSSSDEGAIMEN 933
Query: 463 IDNTTNLTSISTKNNNERNLHIMSDCVVNIP 555
+ + + ++S K + ++ I SD ++IP
Sbjct: 934 VTGSIDFNNVSFKYPSRPDVQIFSDFTLHIP 964
>11_06_0132 - 20431122-20431477,20431739-20433758
Length = 791
Score = 28.7 bits (61), Expect = 6.7
Identities = 22/63 (34%), Positives = 32/63 (50%), Gaps = 3/63 (4%)
Frame = +1
Query: 421 YITVRRQNGFIMETIDNTTNLTSISTKNNNERNLHIMSDC--VVNIP-ISIGFNKNSPLK 591
++ + +G I E IDN NL + + NNN H+ S + N+ +SIG NK
Sbjct: 160 FLDTNKISGSIPEDIDNLINLQAFNLDNNNFTG-HLPSSIGRLQNLHLLSIGNNKIGGPI 218
Query: 592 PLT 600
PLT
Sbjct: 219 PLT 221
>04_01_0430 +
5651326-5651820,5651886-5652124,5652265-5652507,
5653159-5653360,5653679-5654035
Length = 511
Score = 28.7 bits (61), Expect = 6.7
Identities = 15/77 (19%), Positives = 40/77 (51%), Gaps = 1/77 (1%)
Frame = +1
Query: 379 QGTFAYYDNKNFLKYITVRRQNG-FIMETIDNTTNLTSISTKNNNERNLHIMSDCVVNIP 555
+G + + + K+++ R++G ++E I+ TTNL++ + N+ + ++ +++
Sbjct: 307 EGAYGKTQLRVYQKHLSTMRKHGALVIENINITTNLSAAQDVLYSNENIALQAEFKLSLN 366
Query: 556 ISIGFNKNSPLKPLTDI 606
+ SP+ L D+
Sbjct: 367 AYLSDLLYSPVHSLADV 383
>01_07_0166 + 41595729-41595735,41595914-41596863
Length = 318
Score = 28.7 bits (61), Expect = 6.7
Identities = 21/76 (27%), Positives = 37/76 (48%), Gaps = 6/76 (7%)
Frame = +1
Query: 340 ISNDPNIAADKVAQGTFAYYDNKNFLKYITVRRQ-----NGFIMETIDNTTN-LTSISTK 501
++N+P+ AAD V AY+ + F++YI V + G I+ + N N L S
Sbjct: 67 LANNPSAAADWVRNNVQAYWPSV-FIRYIAVGNELGPGDMGTILPAMQNLYNALVSAGLS 125
Query: 502 NNNERNLHIMSDCVVN 549
N+ + + + D + N
Sbjct: 126 NSIKVSTAVKMDVITN 141
>07_03_1154 - 24402550-24405073,24405909-24406330,24407318-24408856
Length = 1494
Score = 28.3 bits (60), Expect = 8.9
Identities = 18/68 (26%), Positives = 32/68 (47%)
Frame = -1
Query: 271 IPQPPQVSLLAANSTNVSIVTLGAGLARIAVMLARYETTSNIQYNQYQPVRSRIDQPVGS 92
+P +VS+ A +S V++ + L A + + Q+ P+RSR D P+
Sbjct: 1424 LPSLKEVSIRACHSNIVNVEEIATSLRADAEKNINKPIVT-FEEKQWVPMRSRTDPPLDH 1482
Query: 91 FGNDTTSN 68
GN +S+
Sbjct: 1483 MGNLLSSS 1490
>04_04_0446 - 25288154-25288863,25288949-25289135,25289331-25291061
Length = 875
Score = 28.3 bits (60), Expect = 8.9
Identities = 13/35 (37%), Positives = 18/35 (51%)
Frame = +1
Query: 439 QNGFIMETIDNTTNLTSISTKNNNERNLHIMSDCV 543
Q F + DN+TN STK+ + + SDCV
Sbjct: 557 QMAFCKDEADNSTNHAPCSTKDAGSIEVPVSSDCV 591
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,139,211
Number of Sequences: 37544
Number of extensions: 414493
Number of successful extensions: 1030
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 996
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1030
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2565528060
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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