Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP21_F_F15
(907 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z75545-5|CAA99883.3| 836|Caenorhabditis elegans Hypothetical pr... 51 1e-06
AF318607-1|AAK01095.1| 398|Caenorhabditis elegans ionotropic gl... 51 1e-06
U97007-1|AAB52291.1| 932|Caenorhabditis elegans Glutamate recep... 44 1e-04
AF318609-1|AAK01097.1| 425|Caenorhabditis elegans ionotropic gl... 44 1e-04
U41547-1|AAA83192.2| 489|Caenorhabditis elegans Glutamate recep... 40 0.002
AF318612-1|AAK01100.1| 406|Caenorhabditis elegans ionotropic gl... 40 0.002
Z81061-7|CAB02939.2| 819|Caenorhabditis elegans Hypothetical pr... 38 0.013
Z78413-11|CAB01667.2| 819|Caenorhabditis elegans Hypothetical p... 38 0.013
AF318614-1|AAK01102.1| 433|Caenorhabditis elegans ionotropic gl... 37 0.023
AC006637-6|AAM54177.1| 328|Caenorhabditis elegans Glutamate rec... 31 0.86
AC006637-5|AAM54176.2| 844|Caenorhabditis elegans Glutamate rec... 31 0.86
Z77661-4|CAB01183.1| 264|Caenorhabditis elegans Hypothetical pr... 31 1.5
U41272-9|AAA82452.4| 1256|Caenorhabditis elegans Prion-like-(q/n... 30 2.0
Z68161-9|CAA92298.2| 688|Caenorhabditis elegans Hypothetical pr... 30 2.6
AF318610-1|AAK01098.1| 396|Caenorhabditis elegans ionotropic gl... 29 4.6
AC024798-8|AAK29921.3| 1115|Caenorhabditis elegans Hypothetical ... 29 6.0
Z69787-8|CAA93640.1| 127|Caenorhabditis elegans Hypothetical pr... 28 8.0
>Z75545-5|CAA99883.3| 836|Caenorhabditis elegans Hypothetical
protein K10D3.1 protein.
Length = 836
Score = 50.8 bits (116), Expect = 1e-06
Identities = 32/91 (35%), Positives = 48/91 (52%), Gaps = 2/91 (2%)
Frame = +3
Query: 33 SLRF*FLYTYGMLLVVSLPKLPTGWSIRLLTGWYWLYCILLVVSYRASMTAILANPAPRV 212
SLR F +T L+ P S RLLTG +W + ++L+ SY A++ A+L
Sbjct: 569 SLRNSFWFTVCSLMQQGSELCPRAASTRLLTGIWWFFALILISSYTANLAAVLTTRRMET 628
Query: 213 TIDTLVELAA-SKLTCGGWGI-ETMNFFQDS 299
I+ +LAA +K+ G G TM+FF +S
Sbjct: 629 PIENADDLAAQTKIKYGTLGRGSTMSFFNES 659
>AF318607-1|AAK01095.1| 398|Caenorhabditis elegans ionotropic
glutamate receptor GLR-3 protein.
Length = 398
Score = 50.8 bits (116), Expect = 1e-06
Identities = 32/91 (35%), Positives = 48/91 (52%), Gaps = 2/91 (2%)
Frame = +3
Query: 33 SLRF*FLYTYGMLLVVSLPKLPTGWSIRLLTGWYWLYCILLVVSYRASMTAILANPAPRV 212
SLR F +T L+ P S RLLTG +W + ++L+ SY A++ A+L
Sbjct: 165 SLRNSFWFTVCSLMQQGSELCPRAASTRLLTGIWWFFALILISSYTANLAAVLTTRRMET 224
Query: 213 TIDTLVELAA-SKLTCGGWGI-ETMNFFQDS 299
I+ +LAA +K+ G G TM+FF +S
Sbjct: 225 PIENADDLAAQTKIKYGTLGRGSTMSFFNES 255
>U97007-1|AAB52291.1| 932|Caenorhabditis elegans Glutamate receptor
family (ampa)protein 5 protein.
Length = 932
Score = 44.4 bits (100), Expect = 1e-04
Identities = 24/70 (34%), Positives = 38/70 (54%), Gaps = 2/70 (2%)
Frame = +3
Query: 96 PTGWSIRLLTGWYWLYCILLVVSYRASMTAILANPAPRVTIDTLVELAASKLTCGGW--G 269
P S RLL G +W++ ++++ +Y A++ A+L P + I L +LA G G
Sbjct: 649 PRAVSTRLLGGTWWVFYLVIISAYTANLAAVLTVSRPYIPIKNLDDLANQTTISYGTIRG 708
Query: 270 IETMNFFQDS 299
TM FFQ+S
Sbjct: 709 GSTMQFFQES 718
>AF318609-1|AAK01097.1| 425|Caenorhabditis elegans ionotropic
glutamate receptor GLR-5 protein.
Length = 425
Score = 44.4 bits (100), Expect = 1e-04
Identities = 24/70 (34%), Positives = 38/70 (54%), Gaps = 2/70 (2%)
Frame = +3
Query: 96 PTGWSIRLLTGWYWLYCILLVVSYRASMTAILANPAPRVTIDTLVELAASKLTCGGW--G 269
P S RLL G +W++ ++++ +Y A++ A+L P + I L +LA G G
Sbjct: 209 PRAVSTRLLGGTWWVFYLVIISAYTANLAAVLTVSRPYIPIKNLDDLANQTTISYGTIRG 268
Query: 270 IETMNFFQDS 299
TM FFQ+S
Sbjct: 269 GSTMQFFQES 278
>U41547-1|AAA83192.2| 489|Caenorhabditis elegans Glutamate receptor
family (ampa)protein 8 protein.
Length = 489
Score = 40.3 bits (90), Expect = 0.002
Identities = 27/94 (28%), Positives = 43/94 (45%), Gaps = 5/94 (5%)
Frame = +1
Query: 526 IMSDCVVNIPISIGFNKNSPLKPLTDIYITRIVEVGLVEKWLND-----AMYTIKTLETN 690
+ +D ++ + +SI KNS P I +VE G +KW+ D AM I +
Sbjct: 321 LFNDGILPVYLSIPLVKNSIYSPYFSTKIREMVERGFTQKWIADYRSYVAMQKINECNST 380
Query: 691 EEEIKALMNLKKLYGAFIALAIGYFLSVMCLIGE 792
K+ ++LK+ GAF G L + +GE
Sbjct: 381 TIGPKSYLDLKRAQGAFWVFLGGAGLGLALFVGE 414
Score = 37.5 bits (83), Expect = 0.013
Identities = 20/62 (32%), Positives = 30/62 (48%), Gaps = 3/62 (4%)
Frame = +3
Query: 60 YGMLLVVSLPKLPTGWSIRLLTGWYWLYCILLVVSYRASMTAILA---NPAPRVTIDTLV 230
+ + + LP+ P WS R+L +WL I L ++ S+ A+ A P ID LV
Sbjct: 178 FSIFVQQGLPEQPRSWSCRVLVALWWLASITLSATFTGSLVALFAVDKTNVPFQNIDQLV 237
Query: 231 EL 236
L
Sbjct: 238 RL 239
>AF318612-1|AAK01100.1| 406|Caenorhabditis elegans ionotropic
glutamate receptor GLR-8 protein.
Length = 406
Score = 40.3 bits (90), Expect = 0.002
Identities = 27/94 (28%), Positives = 43/94 (45%), Gaps = 5/94 (5%)
Frame = +1
Query: 526 IMSDCVVNIPISIGFNKNSPLKPLTDIYITRIVEVGLVEKWLND-----AMYTIKTLETN 690
+ +D ++ + +SI KNS P I +VE G +KW+ D AM I +
Sbjct: 313 LFNDGILPVYLSIPLVKNSIYSPYFSTKIREMVERGFTQKWIADYRSYVAMQKINECNST 372
Query: 691 EEEIKALMNLKKLYGAFIALAIGYFLSVMCLIGE 792
K+ ++LK+ GAF G L + +GE
Sbjct: 373 TIGPKSYLDLKRAQGAFWVFLGGAGLGLALFVGE 406
Score = 37.5 bits (83), Expect = 0.013
Identities = 20/62 (32%), Positives = 30/62 (48%), Gaps = 3/62 (4%)
Frame = +3
Query: 60 YGMLLVVSLPKLPTGWSIRLLTGWYWLYCILLVVSYRASMTAILA---NPAPRVTIDTLV 230
+ + + LP+ P WS R+L +WL I L ++ S+ A+ A P ID LV
Sbjct: 170 FSIFVQQGLPEQPRSWSCRVLVALWWLASITLSATFTGSLVALFAVDKTNVPFQNIDQLV 229
Query: 231 EL 236
L
Sbjct: 230 RL 231
>Z81061-7|CAB02939.2| 819|Caenorhabditis elegans Hypothetical
protein T01C3.10 protein.
Length = 819
Score = 37.5 bits (83), Expect = 0.013
Identities = 26/89 (29%), Positives = 45/89 (50%)
Frame = +1
Query: 562 IGFNKNSPLKPLTDIYITRIVEVGLVEKWLNDAMYTIKTLETNEEEIKALMNLKKLYGAF 741
IGF KNSP L + Y+ + + G +E+ N + T +++ + A + ++ AF
Sbjct: 650 IGFPKNSPHTSLVNHYMLQYQQKGDLERLQNFWLTGACTPDSHSQTQSAPLGIENFLSAF 709
Query: 742 IALAIGYFLSVMCLIGELAHWNCVVXKDP 828
+ LA G +SV+ L E H C+ + P
Sbjct: 710 VLLAGGIIVSVIVLGFE--HIYCMHLRKP 736
>Z78413-11|CAB01667.2| 819|Caenorhabditis elegans Hypothetical
protein T01C3.10 protein.
Length = 819
Score = 37.5 bits (83), Expect = 0.013
Identities = 26/89 (29%), Positives = 45/89 (50%)
Frame = +1
Query: 562 IGFNKNSPLKPLTDIYITRIVEVGLVEKWLNDAMYTIKTLETNEEEIKALMNLKKLYGAF 741
IGF KNSP L + Y+ + + G +E+ N + T +++ + A + ++ AF
Sbjct: 650 IGFPKNSPHTSLVNHYMLQYQQKGDLERLQNFWLTGACTPDSHSQTQSAPLGIENFLSAF 709
Query: 742 IALAIGYFLSVMCLIGELAHWNCVVXKDP 828
+ LA G +SV+ L E H C+ + P
Sbjct: 710 VLLAGGIIVSVIVLGFE--HIYCMHLRKP 736
>AF318614-1|AAK01102.1| 433|Caenorhabditis elegans ionotropic
glutamate receptor NMR-2 protein.
Length = 433
Score = 36.7 bits (81), Expect = 0.023
Identities = 22/74 (29%), Positives = 39/74 (52%)
Frame = +1
Query: 562 IGFNKNSPLKPLTDIYITRIVEVGLVEKWLNDAMYTIKTLETNEEEIKALMNLKKLYGAF 741
IGF KNSP L + Y+ + + G +E+ N + T +++ + A + ++ AF
Sbjct: 357 IGFPKNSPHTSLVNHYMLQYQQKGDLERLQNFWLTGACTPDSHSQTQSAPLGIENFLSAF 416
Query: 742 IALAIGYFLSVMCL 783
+ LA G +SV+ L
Sbjct: 417 VLLAGGIIVSVIVL 430
>AC006637-6|AAM54177.1| 328|Caenorhabditis elegans Glutamate
receptor family (ampa)protein 6, isoform b protein.
Length = 328
Score = 31.5 bits (68), Expect = 0.86
Identities = 11/37 (29%), Positives = 23/37 (62%)
Frame = +1
Query: 694 EEIKALMNLKKLYGAFIALAIGYFLSVMCLIGELAHW 804
E+++ + + +YG F+ LA+G + V+C + E H+
Sbjct: 260 EDLQTALGAENVYGLFLLLALGSGIGVLCAVLEHTHF 296
>AC006637-5|AAM54176.2| 844|Caenorhabditis elegans Glutamate
receptor family (ampa)protein 6, isoform a protein.
Length = 844
Score = 31.5 bits (68), Expect = 0.86
Identities = 11/37 (29%), Positives = 23/37 (62%)
Frame = +1
Query: 694 EEIKALMNLKKLYGAFIALAIGYFLSVMCLIGELAHW 804
E+++ + + +YG F+ LA+G + V+C + E H+
Sbjct: 776 EDLQTALGAENVYGLFLLLALGSGIGVLCAVLEHTHF 812
>Z77661-4|CAB01183.1| 264|Caenorhabditis elegans Hypothetical
protein F40G12.5 protein.
Length = 264
Score = 30.7 bits (66), Expect = 1.5
Identities = 19/59 (32%), Positives = 34/59 (57%), Gaps = 4/59 (6%)
Frame = -2
Query: 519 ISLIVVFSANAGKISCVINSFHNKTILSSNSDVF*EVFIVII---RKCTLS-DFVSRNI 355
+ L+ +F+ +A +C I SFH + + D F +VF+ II +C+ DF++RN+
Sbjct: 5 VLLLFLFAISA---NCSILSFHRNLLGEESEDCFEKVFLAIISGKHECSKDYDFLARNL 60
>U41272-9|AAA82452.4| 1256|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 62
protein.
Length = 1256
Score = 30.3 bits (65), Expect = 2.0
Identities = 16/88 (18%), Positives = 40/88 (45%)
Frame = -1
Query: 289 KKFIVSIPQPPQVSLLAANSTNVSIVTLGAGLARIAVMLARYETTSNIQYNQYQPVRSRI 110
+ F ++P PP+ S L + ++ ++ + + + NQ Q + + +
Sbjct: 605 RAFQAAVPPPPENSQLQFQNFGMTETIPQQSNEHVSQQQQQIAQSRPMNLNQQQVIETPV 664
Query: 109 DQPVGSFGNDTTSNIPYVYKNQNLKEFP 26
+Q + + N +T+N + QN+++ P
Sbjct: 665 NQSISNIFNISTANTMQQQQQQNVQQQP 692
>Z68161-9|CAA92298.2| 688|Caenorhabditis elegans Hypothetical
protein F20C5.5 protein.
Length = 688
Score = 29.9 bits (64), Expect = 2.6
Identities = 33/119 (27%), Positives = 58/119 (48%), Gaps = 5/119 (4%)
Frame = +1
Query: 370 KVAQGTFAYYDN----KNFLKYITVRRQNGFIMETIDNTTNLTSISTKNNNERNLHIMSD 537
K+ Q +F Y K K++ ++ QN + ++D+T SIST+ NN+RN+ +D
Sbjct: 314 KMLQESFNVYQKDSIEKVMEKFLELQHQNLTVF-SVDDTN---SISTELNNDRNV-AKND 368
Query: 538 CVVNIPISIGFNKNSPLKPLTDIYITRIVEVGLVEKWLNDAMYTI-KTLETNEEEIKAL 711
+ + N N+ LK + I + + K D + + KT+++NE IK L
Sbjct: 369 KSEGVESLMLENFNNSLKIALNSVKREISKQNVTIKTDEDMIKDMKKTIDSNENMIKML 427
>AF318610-1|AAK01098.1| 396|Caenorhabditis elegans ionotropic
glutamate receptor GLR-6 protein.
Length = 396
Score = 29.1 bits (62), Expect = 4.6
Identities = 10/33 (30%), Positives = 21/33 (63%)
Frame = +1
Query: 694 EEIKALMNLKKLYGAFIALAIGYFLSVMCLIGE 792
E+++ + + +YG F+ LA+G + V+C + E
Sbjct: 364 EDLQTALGAENVYGLFLLLALGSGIGVLCAVLE 396
>AC024798-8|AAK29921.3| 1115|Caenorhabditis elegans Hypothetical
protein Y48G9A.4 protein.
Length = 1115
Score = 28.7 bits (61), Expect = 6.0
Identities = 14/23 (60%), Positives = 17/23 (73%), Gaps = 1/23 (4%)
Frame = -1
Query: 280 IVSIPQPPQVS-LLAANSTNVSI 215
+ SIP PP ++ LLAAN TNV I
Sbjct: 538 VSSIPPPPPIAGLLAANGTNVPI 560
>Z69787-8|CAA93640.1| 127|Caenorhabditis elegans Hypothetical
protein C44C10.10 protein.
Length = 127
Score = 28.3 bits (60), Expect = 8.0
Identities = 12/27 (44%), Positives = 18/27 (66%)
Frame = +1
Query: 424 ITVRRQNGFIMETIDNTTNLTSISTKN 504
+++ GFI++ ID+ T L SIS KN
Sbjct: 32 LSMSASGGFIIKLIDSMTQLLSISVKN 58
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,778,963
Number of Sequences: 27780
Number of extensions: 387984
Number of successful extensions: 1124
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 1071
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1119
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2307803960
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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