Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP21_F_F13
(818 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AL023815-4|CAF31480.1| 511|Caenorhabditis elegans Hypothetical ... 85 8e-17
AL023815-1|CAA19429.1| 538|Caenorhabditis elegans Hypothetical ... 85 8e-17
AL023815-3|CAD92384.1| 503|Caenorhabditis elegans Hypothetical ... 84 1e-16
AL023815-2|CAD92383.1| 146|Caenorhabditis elegans Hypothetical ... 84 1e-16
U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis def... 36 0.046
U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis def... 36 0.046
AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein. 36 0.046
Z68338-7|CAA92756.2| 866|Caenorhabditis elegans Hypothetical pr... 32 0.57
AF000298-11|AAM97960.1| 518|Caenorhabditis elegans Prion-like-(... 32 0.57
AF000298-10|AAM97961.1| 539|Caenorhabditis elegans Prion-like-(... 32 0.57
AF000298-8|AAC48255.2| 524|Caenorhabditis elegans Prion-like-(q... 32 0.57
U64858-4|AAB18282.2| 151|Caenorhabditis elegans Hypothetical pr... 30 1.7
AC024798-8|AAK29921.3| 1115|Caenorhabditis elegans Hypothetical ... 30 1.7
Z83125-7|CAB05619.1| 407|Caenorhabditis elegans Hypothetical pr... 30 2.3
AC006637-1|AAK85476.2| 342|Caenorhabditis elegans Hypothetical ... 29 3.0
Z70312-3|CAA94385.1| 172|Caenorhabditis elegans Hypothetical pr... 28 7.0
AF003386-9|AAB54259.1| 1621|Caenorhabditis elegans Hypothetical ... 28 7.0
U23529-9|AAL32210.1| 713|Caenorhabditis elegans G-protein-linke... 28 9.2
U23529-8|AAL32209.1| 682|Caenorhabditis elegans G-protein-linke... 28 9.2
U23529-7|AAL32211.1| 622|Caenorhabditis elegans G-protein-linke... 28 9.2
AF117301-1|AAF26202.1| 622|Caenorhabditis elegans G protein-lin... 28 9.2
AF117300-1|AAF26201.1| 713|Caenorhabditis elegans G protein-lin... 28 9.2
AF075245-1|AAD13747.1| 682|Caenorhabditis elegans G protein-lin... 28 9.2
>AL023815-4|CAF31480.1| 511|Caenorhabditis elegans Hypothetical
protein H28O16.1d protein.
Length = 511
Score = 84.6 bits (200), Expect = 8e-17
Identities = 52/87 (59%), Positives = 60/87 (68%)
Frame = +3
Query: 222 AEISTILEERILGAAPKADLEETGRVLSIGDGIARVYGLKNIQAEEMVEFSSKVSKGNWP 401
+E+S ILEERILG +LEETG+VLSIGDGIARVYGLKNIQAEEMVEF S + KG
Sbjct: 7 SEVSKILEERILGTETGINLEETGKVLSIGDGIARVYGLKNIQAEEMVEFDSGI-KG-MA 64
Query: 402 LNLXT*XSXVXEXFWGN*KXFSXEGEI 482
+NL V +GN K EG+I
Sbjct: 65 MNLDV--DNVGVVVFGNDKVI-REGDI 88
>AL023815-1|CAA19429.1| 538|Caenorhabditis elegans Hypothetical
protein H28O16.1a protein.
Length = 538
Score = 84.6 bits (200), Expect = 8e-17
Identities = 52/87 (59%), Positives = 60/87 (68%)
Frame = +3
Query: 222 AEISTILEERILGAAPKADLEETGRVLSIGDGIARVYGLKNIQAEEMVEFSSKVSKGNWP 401
+E+S ILEERILG +LEETG+VLSIGDGIARVYGLKNIQAEEMVEF S + KG
Sbjct: 34 SEVSKILEERILGTETGINLEETGKVLSIGDGIARVYGLKNIQAEEMVEFDSGI-KG-MA 91
Query: 402 LNLXT*XSXVXEXFWGN*KXFSXEGEI 482
+NL V +GN K EG+I
Sbjct: 92 MNLDV--DNVGVVVFGNDKVI-REGDI 115
>AL023815-3|CAD92384.1| 503|Caenorhabditis elegans Hypothetical
protein H28O16.1c protein.
Length = 503
Score = 84.2 bits (199), Expect = 1e-16
Identities = 41/54 (75%), Positives = 46/54 (85%)
Frame = +3
Query: 222 AEISTILEERILGAAPKADLEETGRVLSIGDGIARVYGLKNIQAEEMVEFSSKV 383
+E+S ILEERILG +LEETG+VLSIGDGIARVYGLKNIQAEEMVEF S +
Sbjct: 34 SEVSKILEERILGTETGINLEETGKVLSIGDGIARVYGLKNIQAEEMVEFDSGI 87
>AL023815-2|CAD92383.1| 146|Caenorhabditis elegans Hypothetical
protein H28O16.1b protein.
Length = 146
Score = 84.2 bits (199), Expect = 1e-16
Identities = 41/54 (75%), Positives = 46/54 (85%)
Frame = +3
Query: 222 AEISTILEERILGAAPKADLEETGRVLSIGDGIARVYGLKNIQAEEMVEFSSKV 383
+E+S ILEERILG +LEETG+VLSIGDGIARVYGLKNIQAEEMVEF S +
Sbjct: 34 SEVSKILEERILGTETGINLEETGKVLSIGDGIARVYGLKNIQAEEMVEFDSGI 87
>U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis defect
protein 1, isoformb protein.
Length = 1437
Score = 35.5 bits (78), Expect = 0.046
Identities = 20/59 (33%), Positives = 20/59 (33%)
Frame = -1
Query: 719 GGGXKXXXXXGXPXFXXXXPPPXXXGXFFXXXXGXPPPPXKXGGXPXXXFFXXPPXKGF 543
GG G P PPP G G PPPP GG P PP GF
Sbjct: 724 GGPPPPPPPGGLPPITGGPPPPPPPGGLPPISGGPPPPPPPPGGCPPPP--PPPPPGGF 780
Score = 35.1 bits (77), Expect = 0.061
Identities = 14/28 (50%), Positives = 14/28 (50%)
Frame = -2
Query: 664 PPPXXXGGXFXXXXXXPPPPPXXGGXPP 581
PPP GG PPPPP GG PP
Sbjct: 743 PPPPPPGGLPPISGGPPPPPPPPGGCPP 770
Score = 34.7 bits (76), Expect = 0.080
Identities = 15/37 (40%), Positives = 15/37 (40%)
Frame = -2
Query: 664 PPPXXXGGXFXXXXXXPPPPPXXGGXPPXXFFXXXPP 554
PPP G PPPPP GG PP PP
Sbjct: 726 PPPPPPPGGLPPITGGPPPPPPPGGLPPISGGPPPPP 762
Score = 32.7 bits (71), Expect = 0.32
Identities = 16/46 (34%), Positives = 16/46 (34%)
Frame = -3
Query: 720 GGGXXXXXXXGXXXFFXXXPPPXXXGGFFXXXXGXPPPPXKXGGXP 583
GG G PPP GG G PPPP GG P
Sbjct: 724 GGPPPPPPPGGLPPITGGPPPPPPPGGLPPISGGPPPPPPPPGGCP 769
Score = 29.5 bits (63), Expect = 3.0
Identities = 16/45 (35%), Positives = 16/45 (35%)
Frame = -1
Query: 689 GXPXFXXXXPPPXXXGXFFXXXXGXPPPPXKXGGXPXXXFFXXPP 555
G P PPP G G PPPP GG P PP
Sbjct: 718 GLPPITGGPPPPPPPGGLPPITGGPPPPP-PPGGLPPISGGPPPP 761
>U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis defect
protein 1, isoforma protein.
Length = 1435
Score = 35.5 bits (78), Expect = 0.046
Identities = 20/59 (33%), Positives = 20/59 (33%)
Frame = -1
Query: 719 GGGXKXXXXXGXPXFXXXXPPPXXXGXFFXXXXGXPPPPXKXGGXPXXXFFXXPPXKGF 543
GG G P PPP G G PPPP GG P PP GF
Sbjct: 724 GGPPPPPPPGGLPPITGGPPPPPPPGGLPPISGGPPPPPPPPGGCPPPP--PPPPPGGF 780
Score = 35.1 bits (77), Expect = 0.061
Identities = 14/28 (50%), Positives = 14/28 (50%)
Frame = -2
Query: 664 PPPXXXGGXFXXXXXXPPPPPXXGGXPP 581
PPP GG PPPPP GG PP
Sbjct: 743 PPPPPPGGLPPISGGPPPPPPPPGGCPP 770
Score = 34.7 bits (76), Expect = 0.080
Identities = 15/37 (40%), Positives = 15/37 (40%)
Frame = -2
Query: 664 PPPXXXGGXFXXXXXXPPPPPXXGGXPPXXFFXXXPP 554
PPP G PPPPP GG PP PP
Sbjct: 726 PPPPPPPGGLPPITGGPPPPPPPGGLPPISGGPPPPP 762
Score = 32.7 bits (71), Expect = 0.32
Identities = 16/46 (34%), Positives = 16/46 (34%)
Frame = -3
Query: 720 GGGXXXXXXXGXXXFFXXXPPPXXXGGFFXXXXGXPPPPXKXGGXP 583
GG G PPP GG G PPPP GG P
Sbjct: 724 GGPPPPPPPGGLPPITGGPPPPPPPGGLPPISGGPPPPPPPPGGCP 769
Score = 29.5 bits (63), Expect = 3.0
Identities = 16/45 (35%), Positives = 16/45 (35%)
Frame = -1
Query: 689 GXPXFXXXXPPPXXXGXFFXXXXGXPPPPXKXGGXPXXXFFXXPP 555
G P PPP G G PPPP GG P PP
Sbjct: 718 GLPPITGGPPPPPPPGGLPPITGGPPPPP-PPGGLPPISGGPPPP 761
>AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.
Length = 1018
Score = 35.5 bits (78), Expect = 0.046
Identities = 20/59 (33%), Positives = 20/59 (33%)
Frame = -1
Query: 719 GGGXKXXXXXGXPXFXXXXPPPXXXGXFFXXXXGXPPPPXKXGGXPXXXFFXXPPXKGF 543
GG G P PPP G G PPPP GG P PP GF
Sbjct: 307 GGPPPPPPPGGLPPITGGPPPPPPPGGLPPISGGPPPPPPPPGGCPPPP--PPPPPGGF 363
Score = 35.1 bits (77), Expect = 0.061
Identities = 14/28 (50%), Positives = 14/28 (50%)
Frame = -2
Query: 664 PPPXXXGGXFXXXXXXPPPPPXXGGXPP 581
PPP GG PPPPP GG PP
Sbjct: 326 PPPPPPGGLPPISGGPPPPPPPPGGCPP 353
Score = 34.7 bits (76), Expect = 0.080
Identities = 15/37 (40%), Positives = 15/37 (40%)
Frame = -2
Query: 664 PPPXXXGGXFXXXXXXPPPPPXXGGXPPXXFFXXXPP 554
PPP G PPPPP GG PP PP
Sbjct: 309 PPPPPPPGGLPPITGGPPPPPPPGGLPPISGGPPPPP 345
Score = 32.7 bits (71), Expect = 0.32
Identities = 16/46 (34%), Positives = 16/46 (34%)
Frame = -3
Query: 720 GGGXXXXXXXGXXXFFXXXPPPXXXGGFFXXXXGXPPPPXKXGGXP 583
GG G PPP GG G PPPP GG P
Sbjct: 307 GGPPPPPPPGGLPPITGGPPPPPPPGGLPPISGGPPPPPPPPGGCP 352
Score = 29.5 bits (63), Expect = 3.0
Identities = 16/45 (35%), Positives = 16/45 (35%)
Frame = -1
Query: 689 GXPXFXXXXPPPXXXGXFFXXXXGXPPPPXKXGGXPXXXFFXXPP 555
G P PPP G G PPPP GG P PP
Sbjct: 301 GLPPITGGPPPPPPPGGLPPITGGPPPPP-PPGGLPPISGGPPPP 344
>Z68338-7|CAA92756.2| 866|Caenorhabditis elegans Hypothetical
protein T24B8.4 protein.
Length = 866
Score = 31.9 bits (69), Expect = 0.57
Identities = 16/37 (43%), Positives = 16/37 (43%)
Frame = -2
Query: 664 PPPXXXGGXFXXXXXXPPPPPXXGGXPPXXFFXXXPP 554
PPP GG PPPPP GG PP PP
Sbjct: 86 PPPMFAGGI-------PPPPPMMGGIPPPPPMFGAPP 115
>AF000298-11|AAM97960.1| 518|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform b protein.
Length = 518
Score = 31.9 bits (69), Expect = 0.57
Identities = 14/37 (37%), Positives = 14/37 (37%)
Frame = -2
Query: 664 PPPXXXGGXFXXXXXXPPPPPXXGGXPPXXFFXXXPP 554
PPP G PPPPP G PP PP
Sbjct: 239 PPPPPKGSPPLAGSGSPPPPPAAGSPPPPRTGSPPPP 275
Score = 31.9 bits (69), Expect = 0.57
Identities = 14/37 (37%), Positives = 14/37 (37%)
Frame = -2
Query: 664 PPPXXXGGXFXXXXXXPPPPPXXGGXPPXXFFXXXPP 554
PPP G PPPPP G PP PP
Sbjct: 264 PPPPRTGSPPPPPTGSPPPPPAGGSPPPPRAGSPPPP 300
Score = 30.3 bits (65), Expect = 1.7
Identities = 14/39 (35%), Positives = 14/39 (35%)
Frame = -2
Query: 664 PPPXXXGGXFXXXXXXPPPPPXXGGXPPXXFFXXXPPXR 548
PPP G PPPP G PP PP R
Sbjct: 255 PPPPPAAGSPPPPRTGSPPPPPTGSPPPPPAGGSPPPPR 293
Score = 29.5 bits (63), Expect = 3.0
Identities = 12/28 (42%), Positives = 12/28 (42%)
Frame = -2
Query: 664 PPPXXXGGXFXXXXXXPPPPPXXGGXPP 581
PPP G PPPPP G PP
Sbjct: 281 PPPPAGGSPPPPRAGSPPPPPPPRGSPP 308
>AF000298-10|AAM97961.1| 539|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform c protein.
Length = 539
Score = 31.9 bits (69), Expect = 0.57
Identities = 14/37 (37%), Positives = 14/37 (37%)
Frame = -2
Query: 664 PPPXXXGGXFXXXXXXPPPPPXXGGXPPXXFFXXXPP 554
PPP G PPPPP G PP PP
Sbjct: 260 PPPPPKGSPPLAGSGSPPPPPAAGSPPPPRTGSPPPP 296
Score = 31.9 bits (69), Expect = 0.57
Identities = 14/37 (37%), Positives = 14/37 (37%)
Frame = -2
Query: 664 PPPXXXGGXFXXXXXXPPPPPXXGGXPPXXFFXXXPP 554
PPP G PPPPP G PP PP
Sbjct: 285 PPPPRTGSPPPPPTGSPPPPPAGGSPPPPRAGSPPPP 321
Score = 30.3 bits (65), Expect = 1.7
Identities = 14/39 (35%), Positives = 14/39 (35%)
Frame = -2
Query: 664 PPPXXXGGXFXXXXXXPPPPPXXGGXPPXXFFXXXPPXR 548
PPP G PPPP G PP PP R
Sbjct: 276 PPPPPAAGSPPPPRTGSPPPPPTGSPPPPPAGGSPPPPR 314
Score = 29.5 bits (63), Expect = 3.0
Identities = 12/28 (42%), Positives = 12/28 (42%)
Frame = -2
Query: 664 PPPXXXGGXFXXXXXXPPPPPXXGGXPP 581
PPP G PPPPP G PP
Sbjct: 302 PPPPAGGSPPPPRAGSPPPPPPPRGSPP 329
>AF000298-8|AAC48255.2| 524|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform a protein.
Length = 524
Score = 31.9 bits (69), Expect = 0.57
Identities = 14/37 (37%), Positives = 14/37 (37%)
Frame = -2
Query: 664 PPPXXXGGXFXXXXXXPPPPPXXGGXPPXXFFXXXPP 554
PPP G PPPPP G PP PP
Sbjct: 245 PPPPPKGSPPLAGSGSPPPPPAAGSPPPPRTGSPPPP 281
Score = 31.9 bits (69), Expect = 0.57
Identities = 14/37 (37%), Positives = 14/37 (37%)
Frame = -2
Query: 664 PPPXXXGGXFXXXXXXPPPPPXXGGXPPXXFFXXXPP 554
PPP G PPPPP G PP PP
Sbjct: 270 PPPPRTGSPPPPPTGSPPPPPAGGSPPPPRAGSPPPP 306
Score = 30.3 bits (65), Expect = 1.7
Identities = 14/39 (35%), Positives = 14/39 (35%)
Frame = -2
Query: 664 PPPXXXGGXFXXXXXXPPPPPXXGGXPPXXFFXXXPPXR 548
PPP G PPPP G PP PP R
Sbjct: 261 PPPPPAAGSPPPPRTGSPPPPPTGSPPPPPAGGSPPPPR 299
Score = 29.5 bits (63), Expect = 3.0
Identities = 12/28 (42%), Positives = 12/28 (42%)
Frame = -2
Query: 664 PPPXXXGGXFXXXXXXPPPPPXXGGXPP 581
PPP G PPPPP G PP
Sbjct: 287 PPPPAGGSPPPPRAGSPPPPPPPRGSPP 314
>U64858-4|AAB18282.2| 151|Caenorhabditis elegans Hypothetical
protein C16D9.3 protein.
Length = 151
Score = 30.3 bits (65), Expect = 1.7
Identities = 12/30 (40%), Positives = 16/30 (53%)
Frame = -3
Query: 366 PPSPQPGCSSSHKHERYHHQCSRHDQSLLD 277
PP Q C ER H C R+DQS+++
Sbjct: 96 PPGSQLKCHFDKSRERLHANCYRYDQSVVN 125
>AC024798-8|AAK29921.3| 1115|Caenorhabditis elegans Hypothetical
protein Y48G9A.4 protein.
Length = 1115
Score = 30.3 bits (65), Expect = 1.7
Identities = 12/28 (42%), Positives = 12/28 (42%)
Frame = -2
Query: 664 PPPXXXGGXFXXXXXXPPPPPXXGGXPP 581
PPP PPPPP GG PP
Sbjct: 564 PPPPLPQNLSGAPPPPPPPPPMLGGPPP 591
>Z83125-7|CAB05619.1| 407|Caenorhabditis elegans Hypothetical
protein T15D6.9 protein.
Length = 407
Score = 29.9 bits (64), Expect = 2.3
Identities = 11/30 (36%), Positives = 17/30 (56%)
Frame = -3
Query: 366 PPSPQPGCSSSHKHERYHHQCSRHDQSLLD 277
PP Q C H +Y+ C R+DQS+++
Sbjct: 285 PPGSQSICIFLHDWNKYYADCFRYDQSIIN 314
>AC006637-1|AAK85476.2| 342|Caenorhabditis elegans Hypothetical
protein F41B4.1 protein.
Length = 342
Score = 29.5 bits (63), Expect = 3.0
Identities = 13/34 (38%), Positives = 17/34 (50%)
Frame = -3
Query: 375 RRTPPSPQPGCSSSHKHERYHHQCSRHDQSLLDQ 274
R PP P P + SHK+E SR S L++
Sbjct: 54 RELPPPPPPRKTPSHKYEEMRRSLSRGPSSTLER 87
>Z70312-3|CAA94385.1| 172|Caenorhabditis elegans Hypothetical
protein ZC168.5 protein.
Length = 172
Score = 28.3 bits (60), Expect = 7.0
Identities = 12/27 (44%), Positives = 13/27 (48%)
Frame = -2
Query: 664 PPPXXXGGXFXXXXXXPPPPPXXGGXP 584
PPP GG + PPPPP G P
Sbjct: 42 PPPPPCGGGYEAPP--PPPPPSYAGGP 66
>AF003386-9|AAB54259.1| 1621|Caenorhabditis elegans Hypothetical
protein F59E12.9 protein.
Length = 1621
Score = 28.3 bits (60), Expect = 7.0
Identities = 12/28 (42%), Positives = 12/28 (42%)
Frame = -2
Query: 664 PPPXXXGGXFXXXXXXPPPPPXXGGXPP 581
PPP G P PPP GG PP
Sbjct: 1585 PPPLMGGPPPRLGMPPPGPPPPNGGPPP 1612
>U23529-9|AAL32210.1| 713|Caenorhabditis elegans G-protein-linked
acetylcholinereceptor protein 1, isoform b protein.
Length = 713
Score = 27.9 bits (59), Expect = 9.2
Identities = 19/60 (31%), Positives = 28/60 (46%), Gaps = 1/60 (1%)
Frame = -2
Query: 295 RPVSSRSALGAAPR-ILSSRMVEISAALWVVETCSLRDXXXXXXXXTFDTWVAALGKRLA 119
RP SSR + + PR I + E +AA + E+ D D WV ++ KR+A
Sbjct: 453 RPRSSRRSEHSTPRQIAKVKQAEGTAAQLIEESVPDDDQTETIEVKRTDRWVVSMKKRIA 512
>U23529-8|AAL32209.1| 682|Caenorhabditis elegans G-protein-linked
acetylcholinereceptor protein 1, isoform a protein.
Length = 682
Score = 27.9 bits (59), Expect = 9.2
Identities = 19/60 (31%), Positives = 28/60 (46%), Gaps = 1/60 (1%)
Frame = -2
Query: 295 RPVSSRSALGAAPR-ILSSRMVEISAALWVVETCSLRDXXXXXXXXTFDTWVAALGKRLA 119
RP SSR + + PR I + E +AA + E+ D D WV ++ KR+A
Sbjct: 422 RPRSSRRSEHSTPRQIAKVKQAEGTAAQLIEESVPDDDQTETIEVKRTDRWVVSMKKRIA 481
>U23529-7|AAL32211.1| 622|Caenorhabditis elegans G-protein-linked
acetylcholinereceptor protein 1, isoform c protein.
Length = 622
Score = 27.9 bits (59), Expect = 9.2
Identities = 19/60 (31%), Positives = 28/60 (46%), Gaps = 1/60 (1%)
Frame = -2
Query: 295 RPVSSRSALGAAPR-ILSSRMVEISAALWVVETCSLRDXXXXXXXXTFDTWVAALGKRLA 119
RP SSR + + PR I + E +AA + E+ D D WV ++ KR+A
Sbjct: 422 RPRSSRRSEHSTPRQIAKVKQAEGTAAQLIEESVPDDDQTETIEVKRTDRWVVSMKKRIA 481
>AF117301-1|AAF26202.1| 622|Caenorhabditis elegans G protein-linked
acetylcholinereceptor GAR-1c protein.
Length = 622
Score = 27.9 bits (59), Expect = 9.2
Identities = 19/60 (31%), Positives = 28/60 (46%), Gaps = 1/60 (1%)
Frame = -2
Query: 295 RPVSSRSALGAAPR-ILSSRMVEISAALWVVETCSLRDXXXXXXXXTFDTWVAALGKRLA 119
RP SSR + + PR I + E +AA + E+ D D WV ++ KR+A
Sbjct: 422 RPRSSRRSEHSTPRQIAKVKQAEGTAAQLIEESVPDDDQTETIEVKRTDRWVVSMKKRIA 481
>AF117300-1|AAF26201.1| 713|Caenorhabditis elegans G protein-linked
acetylcholinereceptor GAR-1a protein.
Length = 713
Score = 27.9 bits (59), Expect = 9.2
Identities = 19/60 (31%), Positives = 28/60 (46%), Gaps = 1/60 (1%)
Frame = -2
Query: 295 RPVSSRSALGAAPR-ILSSRMVEISAALWVVETCSLRDXXXXXXXXTFDTWVAALGKRLA 119
RP SSR + + PR I + E +AA + E+ D D WV ++ KR+A
Sbjct: 453 RPRSSRRSEHSTPRQIAKVKQAEGTAAQLIEESVPDDDQTETIEVKRTDRWVVSMKKRIA 512
>AF075245-1|AAD13747.1| 682|Caenorhabditis elegans G protein-linked
acetylcholinereceptor GAR-1b protein.
Length = 682
Score = 27.9 bits (59), Expect = 9.2
Identities = 19/60 (31%), Positives = 28/60 (46%), Gaps = 1/60 (1%)
Frame = -2
Query: 295 RPVSSRSALGAAPR-ILSSRMVEISAALWVVETCSLRDXXXXXXXXTFDTWVAALGKRLA 119
RP SSR + + PR I + E +AA + E+ D D WV ++ KR+A
Sbjct: 422 RPRSSRRSEHSTPRQIAKVKQAEGTAAQLIEESVPDDDQTETIEVKRTDRWVVSMKKRIA 481
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,506,278
Number of Sequences: 27780
Number of extensions: 287641
Number of successful extensions: 1379
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 783
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1114
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 2019417216
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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