Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP21_F_F02
         (906 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL032637-18|CAE17998.1|  193|Caenorhabditis elegans Hypothetical...    32   0.49 
U58755-7|AAB00696.1|  136|Caenorhabditis elegans Hypothetical pr...    29   6.0  

>AL032637-18|CAE17998.1|  193|Caenorhabditis elegans Hypothetical
           protein Y43F8C.20 protein.
          Length = 193

 Score = 32.3 bits (70), Expect = 0.49
 Identities = 22/74 (29%), Positives = 25/74 (33%)
 Frame = -3

Query: 901 GGGKXPGAXKREGGLGXXKPPXGFWGXGGRQKKGFXAXXGGGKXTRPXTGXPXXRAEXPR 722
           GGG   G  + + G G      G WG GG    G+    GGG   R   G        P 
Sbjct: 92  GGGGRGGGGRGDWG-GNNNGGGGNWGGGGNNDGGWGGNNGGGGGGRGGGGRGGDGRGPPG 150

Query: 721 GXAPA*XGGXXXGG 680
                  GG   GG
Sbjct: 151 SNGGGDWGGNGGGG 164



 Score = 28.7 bits (61), Expect = 6.0
 Identities = 16/43 (37%), Positives = 17/43 (39%)
 Frame = -3

Query: 904 WGGGKXPGAXKREGGLGXXKPPXGFWGXGGRQKKGFXAXXGGG 776
           WGGG  PG     GG        G WG GG +  G      GG
Sbjct: 40  WGGGGGPGGWGNNGG--------GGWGRGGGRGGGDWGGNNGG 74


>U58755-7|AAB00696.1|  136|Caenorhabditis elegans Hypothetical
           protein C34D4.11 protein.
          Length = 136

 Score = 28.7 bits (61), Expect = 6.0
 Identities = 24/77 (31%), Positives = 25/77 (32%), Gaps = 2/77 (2%)
 Frame = -3

Query: 904 WGGGKXPGAXKREGGLGXXKPPXGFWG--XGGRQKKGFXAXXGGGKXTRPXTGXPXXRAE 731
           WGGG  PG  +  GG G      G WG   GG    G      GG       G    R  
Sbjct: 48  WGGG-GPGWGRGGGGSGWGGGRGGGWGNNGGGGNWGGNGGGGNGGGGRGGGGGGGGGRGG 106

Query: 730 XPRGXAPA*XGGXXXGG 680
              G      GG   GG
Sbjct: 107 GGGGRGGGGGGGGGRGG 123


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,053,696
Number of Sequences: 27780
Number of extensions: 107263
Number of successful extensions: 334
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 246
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 322
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2307803960
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)