Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP21_F_F01
         (1073 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X14420-1|CAA32583.1| 1466|Homo sapiens prepro-alpha-1 type 3 col...    31   7.2  
BC028178-1|AAH28178.1| 1163|Homo sapiens COL3A1 protein protein.       31   7.2  
AY016295-2|AAL13167.1| 1466|Homo sapiens type III preprocollagen...    31   7.2  
AC066694-1|AAY24164.1| 1466|Homo sapiens unknown protein.              31   7.2  
X15332-1|CAA33387.1| 1078|Homo sapiens alpha-1 (III) collagen pr...    31   9.5  

>X14420-1|CAA32583.1| 1466|Homo sapiens prepro-alpha-1 type 3
           collagen protein.
          Length = 1466

 Score = 31.1 bits (67), Expect = 7.2
 Identities = 19/39 (48%), Positives = 19/39 (48%), Gaps = 2/39 (5%)
 Frame = +2

Query: 569 GFPGKNLARGGXKNFXPQXPPPXKFGEV--LGPPXEISP 679
           G PGKN  RGG     PQ  PP K GE    GPP    P
Sbjct: 588 GAPGKNGERGGPGGPGPQG-PPGKNGETGPQGPPGPTGP 625


>BC028178-1|AAH28178.1| 1163|Homo sapiens COL3A1 protein protein.
          Length = 1163

 Score = 31.1 bits (67), Expect = 7.2
 Identities = 19/39 (48%), Positives = 19/39 (48%), Gaps = 2/39 (5%)
 Frame = +2

Query: 569 GFPGKNLARGGXKNFXPQXPPPXKFGEV--LGPPXEISP 679
           G PGKN  RGG     PQ  PP K GE    GPP    P
Sbjct: 588 GAPGKNGERGGPGGPGPQG-PPGKNGETGPQGPPGPTGP 625


>AY016295-2|AAL13167.1| 1466|Homo sapiens type III preprocollagen
           alpha 1 chain protein.
          Length = 1466

 Score = 31.1 bits (67), Expect = 7.2
 Identities = 19/39 (48%), Positives = 19/39 (48%), Gaps = 2/39 (5%)
 Frame = +2

Query: 569 GFPGKNLARGGXKNFXPQXPPPXKFGEV--LGPPXEISP 679
           G PGKN  RGG     PQ  PP K GE    GPP    P
Sbjct: 588 GAPGKNGERGGPGGPGPQG-PPGKNGETGPQGPPGPTGP 625


>AC066694-1|AAY24164.1| 1466|Homo sapiens unknown protein.
          Length = 1466

 Score = 31.1 bits (67), Expect = 7.2
 Identities = 19/39 (48%), Positives = 19/39 (48%), Gaps = 2/39 (5%)
 Frame = +2

Query: 569 GFPGKNLARGGXKNFXPQXPPPXKFGEV--LGPPXEISP 679
           G PGKN  RGG     PQ  PP K GE    GPP    P
Sbjct: 588 GAPGKNGERGGPGGPGPQG-PPGKNGETGPQGPPGPTGP 625


>X15332-1|CAA33387.1| 1078|Homo sapiens alpha-1 (III) collagen
           protein.
          Length = 1078

 Score = 30.7 bits (66), Expect = 9.5
 Identities = 19/39 (48%), Positives = 19/39 (48%), Gaps = 2/39 (5%)
 Frame = +2

Query: 569 GFPGKNLARGGXKNFXPQXPPPXKFGEV--LGPPXEISP 679
           G PGKN  RGG     PQ  PP K GE    GPP    P
Sbjct: 441 GAPGKNGERGGPGGPGPQG-PPGKNGEYGPQGPPGPTGP 478


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 78,183,810
Number of Sequences: 237096
Number of extensions: 1125769
Number of successful extensions: 11801
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 2571
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5951
length of database: 76,859,062
effective HSP length: 91
effective length of database: 55,283,326
effective search space used: 14705364716
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)