Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP21_F_E23
         (932 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC20G4.06c |adf1|cof1|cofilin|Schizosaccharomyces pombe|chr 1|...    62   8e-11
SPCC126.06 |twf1||twinfilin|Schizosaccharomyces pombe|chr 3|||Ma...    38   0.002
SPAC3A11.06 |mvp1||sorting nexin Mvp1|Schizosaccharomyces pombe|...    27   3.8  
SPAC1D4.11c |lkh1|kic1|dual specificity protein kinase Lkh1|Schi...    26   8.7  

>SPAC20G4.06c |adf1|cof1|cofilin|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 137

 Score = 62.5 bits (145), Expect = 8e-11
 Identities = 35/96 (36%), Positives = 55/96 (57%)
 Frame = +3

Query: 195 KKHRYVVFYIRDEKQIDVETVGERNAEYEQFLEDLQKGGTGECRYGLFDFEYTHQCQGTS 374
           K  RYVVF + D K   V      + +++ FL DL +    +CRY ++DFE+ +  +G  
Sbjct: 23  KSLRYVVFKMNDTKTEIVVEKKSTDKDFDTFLGDLPEK---DCRYAIYDFEF-NLGEGV- 77

Query: 375 EASKKQKLFLMSWCPDTAKVKKKMLYSSSFDALKKS 482
               + K+  +SW PD A +K KM+YSSS D L+++
Sbjct: 78  ----RNKIIFISWSPDVAPIKSKMVYSSSKDTLRRA 109


>SPCC126.06 |twf1||twinfilin|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 328

 Score = 37.9 bits (84), Expect = 0.002
 Identities = 28/86 (32%), Positives = 44/86 (51%)
 Frame = +3

Query: 204 RYVVFYIRDEKQIDVETVGERNAEYEQFLEDLQKGGTGECRYGLFDFEYTHQCQGTSEAS 383
           R  +  I +E   DV+T+ E++   E    D +K    EC  G  +  +        + S
Sbjct: 26  RAAIISISNENSFDVKTMVEKSESIES---DFKK--VRECLLGSEEPAFVL----VYDDS 76

Query: 384 KKQKLFLMSWCPDTAKVKKKMLYSSS 461
           KK  L L+S+ P+ A V++KMLY+SS
Sbjct: 77  KKNLLQLISYVPENANVRRKMLYASS 102


>SPAC3A11.06 |mvp1||sorting nexin Mvp1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 664

 Score = 27.1 bits (57), Expect = 3.8
 Identities = 20/74 (27%), Positives = 28/74 (37%), Gaps = 2/74 (2%)
 Frame = +3

Query: 417 PDTAKVKKKMLY--SSSFDALKKSLXRSSEVHPSDRPLGSVSGGRRREAPRHRSPINSIY 590
           PD  K  K      SS+  ++  S   +  +H    P  SV       A   R P + I 
Sbjct: 194 PDIQKQPKGFFSYPSSTVSSIAPSTLEAGNLHSQQPPKFSVDSSVDDNAITPRKPFSKIP 253

Query: 591 TRARDETEPALRHS 632
            R    T+P L +S
Sbjct: 254 NRLSPSTQPLLSNS 267


>SPAC1D4.11c |lkh1|kic1|dual specificity protein kinase
           Lkh1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 690

 Score = 25.8 bits (54), Expect = 8.7
 Identities = 12/44 (27%), Positives = 23/44 (52%), Gaps = 5/44 (11%)
 Frame = -2

Query: 412 HDIRKSFCFLLASDVPWHWCVYSKSNRPY-----LHSPVPPFCR 296
           HD+     +++ S   +H C  ++S  P+     LH+P+P  C+
Sbjct: 107 HDVASHPSYMVQSPTSYHACSNNQSPFPHSHHPPLHNPLPVSCQ 150


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,822,372
Number of Sequences: 5004
Number of extensions: 48999
Number of successful extensions: 129
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 124
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 127
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 473333082
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)