Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP21_F_E19
         (897 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC30D11.06c |||DUF300 family protein|Schizosaccharomyces pombe...    52   1e-07
SPAC1D4.11c |lkh1|kic1|dual specificity protein kinase Lkh1|Schi...    29   0.90 
SPBP8B7.09c |||karyopherin|Schizosaccharomyces pombe|chr 2|||Manual    27   4.8  
SPCC777.04 |||amino acid transporter |Schizosaccharomyces pombe|...    27   4.8  
SPAC1A6.03c |||phospholipase |Schizosaccharomyces pombe|chr 1|||...    27   4.8  

>SPAC30D11.06c |||DUF300 family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 426

 Score = 51.6 bits (118), Expect = 1e-07
 Identities = 24/72 (33%), Positives = 41/72 (56%)
 Frame = +1

Query: 475 ISIWQITQHIVHYTKPSLQKHIIRILWMVPIYALNALIGLEFPEQSIYLDSLRECYEAYV 654
           +S   I  H+ +Y KP LQ+ ++RIL M+ IY+  + + +   +     +  RE YEA+ 
Sbjct: 19  LSCISIITHLKNYKKPVLQRSVVRILMMIVIYSSVSFLSVYNEKIGSIFEPFREIYEAFA 78

Query: 655 IYNFMKYLLNYL 690
           +Y F   L++YL
Sbjct: 79  LYCFFCLLIDYL 90



 Score = 26.6 bits (56), Expect = 4.8
 Identities = 10/27 (37%), Positives = 16/27 (59%)
 Frame = +2

Query: 806 KHGILQYTLLRPITTVISMIXELNDXY 886
           K GILQYT L+P   +  ++ ++   Y
Sbjct: 131 KRGILQYTWLKPFLVIAVLLTKVTGVY 157


>SPAC1D4.11c |lkh1|kic1|dual specificity protein kinase
           Lkh1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 690

 Score = 29.1 bits (62), Expect = 0.90
 Identities = 12/21 (57%), Positives = 13/21 (61%)
 Frame = -2

Query: 815 FHACSYVQIPFPISHGXRQHN 753
           +HACS  Q PFP SH    HN
Sbjct: 123 YHACSNNQSPFPHSHHPPLHN 143


>SPBP8B7.09c |||karyopherin|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 978

 Score = 26.6 bits (56), Expect = 4.8
 Identities = 13/64 (20%), Positives = 31/64 (48%)
 Frame = +1

Query: 514 TKPSLQKHIIRILWMVPIYALNALIGLEFPEQSIYLDSLRECYEAYVIYNFMKYLLNYLN 693
           T P+  +H+ +++    +     L+ ++     +  +    C  ++ +YN   YL+ YL+
Sbjct: 287 TDPNFDEHVAKLINAQGV----ELVAIKSDPSELSPELKENC--SFQLYNLFPYLIRYLS 340

Query: 694 DGHD 705
           D +D
Sbjct: 341 DDYD 344


>SPCC777.04 |||amino acid transporter |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 521

 Score = 26.6 bits (56), Expect = 4.8
 Identities = 13/44 (29%), Positives = 24/44 (54%)
 Frame = +1

Query: 502 IVHYTKPSLQKHIIRILWMVPIYALNALIGLEFPEQSIYLDSLR 633
           ++HY +P L   I   +++V I A+N L    F E   +L +++
Sbjct: 149 VIHYWRPDLNVGIWVAVFLVVILAINLLHVKYFGEVEFWLSAVK 192


>SPAC1A6.03c |||phospholipase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 624

 Score = 26.6 bits (56), Expect = 4.8
 Identities = 11/23 (47%), Positives = 15/23 (65%)
 Frame = +3

Query: 372 GASAYINSTFYKQWVQEIRSRST 440
           G SA + +TF  +W QE+ S ST
Sbjct: 318 GTSATLFNTFLLEWSQEVTSNST 340


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,364,002
Number of Sequences: 5004
Number of extensions: 67557
Number of successful extensions: 132
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 127
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 132
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 452494940
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)