Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP21_F_E10
         (900 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase Mok11|S...    28   2.1  
SPCC4G3.12c |||ubiquitin-protein ligase E3 |Schizosaccharomyces ...    27   4.8  
SPAC2E1P3.05c |||fungal cellulose binding domain protein|Schizos...    26   8.4  
SPAC23E2.02 |lsd2|swm2, saf140|histone demethylase SWIRM2 |Schiz...    26   8.4  

>SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase
           Mok11|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2397

 Score = 27.9 bits (59), Expect = 2.1
 Identities = 12/24 (50%), Positives = 17/24 (70%)
 Frame = -1

Query: 375 SIYHCDRSFSNISNTIHSISFVNA 304
           S++    +FSNI++ IH ISF NA
Sbjct: 800 SLFRWSATFSNIADGIHRISFNNA 823


>SPCC4G3.12c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 821

 Score = 26.6 bits (56), Expect = 4.8
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = -3

Query: 763 TCLLQLIMVTNKAIASQISQIKHFFH 686
           +CL+ L   TN  I  ++   KHFFH
Sbjct: 765 SCLICLETYTNGDICRKLQACKHFFH 790


>SPAC2E1P3.05c |||fungal cellulose binding domain
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 197

 Score = 25.8 bits (54), Expect = 8.4
 Identities = 18/49 (36%), Positives = 25/49 (51%)
 Frame = -1

Query: 432 STTQGKTKIHKFTLTSYDLSIYHCDRSFSNISNTIHSISFVNAFFSSVS 286
           STT   + +   TLTS   S      S  +IS+TI S S   + F+S+S
Sbjct: 123 STTSSSSLVSSTTLTSSSPSAVSSTTSIPSISSTISS-SVSTSSFTSLS 170


>SPAC23E2.02 |lsd2|swm2, saf140|histone demethylase SWIRM2
          |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1273

 Score = 25.8 bits (54), Expect = 8.4
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = +3

Query: 33 IP*DXNCWICCSKNFAKTVNR 95
          +P   + WICC+K F  T +R
Sbjct: 1  MPLGRSSWICCAKYFVNTKSR 21


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,065,568
Number of Sequences: 5004
Number of extensions: 53555
Number of successful extensions: 123
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 120
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 123
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 454497130
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)