Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP21_F_E06
         (884 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_04_0103 + 16046012-16046018,16046214-16046366,16046908-160471...    30   2.8  
02_01_0258 - 1709672-1709752,1710277-1710460,1710627-1710841,171...    29   3.8  

>01_04_0103 +
           16046012-16046018,16046214-16046366,16046908-16047158,
           16047509-16047631,16047818-16047931,16048153-16048315,
           16048867-16049462
          Length = 468

 Score = 29.9 bits (64), Expect = 2.8
 Identities = 18/66 (27%), Positives = 32/66 (48%), Gaps = 1/66 (1%)
 Frame = +1

Query: 217 ELGNPEPLAECSNPKLPGPCKDIQCVFEKSGF-LTENKTLIKEAYKTHLRQWAKEHEGWS 393
           ++ N  P+ +  N        +++CV +K+G   TE   +  + YK  L QW K+H    
Sbjct: 392 DVSNTPPVGQELNKPAEVTLLNVKCVEQKNGLQFTEGPAV--DRYKEILVQWTKDHGAEF 449

Query: 394 VAVEKA 411
           V+ + A
Sbjct: 450 VSFDAA 455


>02_01_0258 -
           1709672-1709752,1710277-1710460,1710627-1710841,
           1711321-1711390,1711525-1711607,1711720-1711884,
           1712068-1712172,1713021-1713140,1713620-1713718,
           1713790-1713885,1714367-1714480,1715265-1715372,
           1716200-1716264,1716430-1716609,1716747-1717397,
           1717497-1717565,1717639-1717858
          Length = 874

 Score = 29.5 bits (63), Expect = 3.8
 Identities = 16/41 (39%), Positives = 22/41 (53%), Gaps = 3/41 (7%)
 Frame = +1

Query: 154 FTVAQAAKATLKPISACCNIPELGNPEPLAEC---SNPKLP 267
           F VA +  A+ K IS CC   ++     +AEC   SNP +P
Sbjct: 410 FEVAPSISASEKIISVCCKSSKISLALDVAECLCKSNPDMP 450


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,788,917
Number of Sequences: 37544
Number of extensions: 334325
Number of successful extensions: 891
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 873
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 891
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2503236492
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)